Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq94936 84.2 4e-14 seq25466 82.4 1e-13 seq20494 78.8 2e-12 seq17088 77.0 6e-12 >seq94936 Length=2959 Score = 84.2 bits (92), Expect = 4e-14 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| |||||||||||||||||| || ||| | || ||||| Sbjct 2054 ACCAAACTGTCTCACGACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGC 1995 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| ||| |||| | | | ||| || ||||||||||||| | || Sbjct 1994 CGAACCCTTGGGACC---TTCTCCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCA 1938 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || |||||||||| |||||||| || |||| |||||||| | ||| |||| Sbjct 1937 AACGATTTCGTCGCTATGGACGCTTGGAAATCATCAGCCTGTTATCCCCGGAGTACCTTT 1878 Query 224 T 224 | Sbjct 1877 T 1877 >seq25466 Length=7634 Score = 82.4 bits (90), Expect = 1e-13 Identities = 83/107 (78%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 138 TAGGAAGAGCCGACATCGAAGGA-TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||||||||||| |||| | |||||| || | ||| || | || ||||||| |||| Sbjct 6055 TAGGAAGAGCCGACATTGAAGAATTCAAAAGGCTATGTCACTGTAAATGCTTGGCGGCCA 6114 Query 197 CAAGCCAGTTATCC-----CTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||| ||||||| | ||||| |||||||||| || |||| || Sbjct 6115 CAAAACAGTTATACACCTGATGTGGCAACTTTTCTGACATCTCTTGC 6161 >seq20494 Length=14513 Score = 78.8 bits (86), Expect = 2e-12 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 8114 TGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGC 8164 >seq17088 Length=8753 Score = 77.0 bits (84), Expect = 6e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCA 81 || |||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 7791 CACCAGTAGGGTAAAACTAACCTGTTTCATGACGGTCTAATCCCAGCTCA 7840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853587200736