Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq94936 385 2e-104 seq93959 84.2 8e-14 >seq94936 Length=2959 Score = 385 bits (426), Expect = 2e-104 Identities = 426/552 (77%), Gaps = 23/552 (4%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| ||| |||| | ||| |||||| | || ||| | ||| || |||||| Sbjct 537 TCGACTATGGACCTTAG-CACCCACAGTCTGTCTGCTATGCTGT-ACTCGTCGACATTCG 480 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCTCTACCTCC 119 |||||||||||| || |||||| ||| || |||||||| ||||||||||||||||| | Sbjct 479 GAGTTTGGTTGAGTTTGGTAAGTCTGTAGGACCCCCTAGCTCATCCAGTGCTCTACCTTC 420 Query 120 GGGAAGAAACACGCGA---CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACG 176 | | | | ||| | |||| |||||||| |||||| |||||||||||||| | Sbjct 419 G--ACGGTAATCGCTATAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCTATATCC 362 Query 177 AAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTG 236 ||||||||| |||||||||||||| |||||| ||||||||| |||||||| |||| Sbjct 361 GAGTTTGATTAGCCTTTCACCCCTAGCCACAGCTCATCCCCTACTTTTTCAACAGTAGTG 302 Query 237 GGTTCGGTCCTCCACGCGG-TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 ||||||||||| || |||| | |||| | |||||||||| |||||| ||||||||| Sbjct 301 GGTTCGGTCCTTCA-GCGGATATTACTCCACCTTCAACCTGGCCATGGCTAGATCACTCG 243 Query 296 GCTTCGGGTCTTGATCGTGCCACTCATA-CGCCCTATTCGGACTCGCTTTCGCTACGGCT 354 | ||||||||| || | ||| | | |||||||||| ||||||||||||||||| || Sbjct 242 GTTTCGGGTCTAATTCATCTAACTAAAATCGCCCTATTCAGACTCGCTTTCGCTACGCCT 183 Query 355 ACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGC 414 || || |||| |||| || || | | || | || |||| | | |||| | ||||||| Sbjct 182 ACACCTAACGGCTTAAGCTTGCTAGATAA-ACTAAGTCGCTGACCCATTATACAAAAGGT 124 Query 415 ACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTT 474 |||||||||| | || |||| | || |||||||| | ||||| ||| ||||| Sbjct 123 ACGCCGTCAC--AGAACATAAATG-----TCTGCTCCGACTGCTTGTAAGCATTCGGTTT 71 Query 475 CAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 ||||| |||||||||||||| | | ||||| |||||||||||||||||||||||||||| Sbjct 70 CAGGT-CTATTTCACTCCCCTTGTC-GGGGTTCTTTTCACCTTTCCCTCACGGTACTTGT 13 Query 533 CCGCTATCGGTC 544 | ||||||||| Sbjct 12 TCACTATCGGTC 1 >seq93959 Length=1071 Score = 84.2 bits (92), Expect = 8e-14 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 514 TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGG 573 ||||||||||||||||||| | ||||||||||| | ||||| ||||||||| |||||| Sbjct 1 TTTCCCTCACGGTACTTGTTCACTATCGGTCACTAGAGAGTACTTAGGCTTAGAGGGTGG 60 Query 574 TCCCGCCAGATTCACACGAAATTTCA 599 |||| | | |||| || |||||| Sbjct 61 TCCCCCTATGTTCAAACAGGATTTCA 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1815870898944