Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq94936 293 6e-77 seq93959 91.5 4e-16 >seq94936 Length=2959 Score = 293 bits (324), Expect = 6e-77 Identities = 283/346 (82%), Gaps = 18/346 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||| |||||||||| ||||| ||||||||||| ||| || || Sbjct 335 CCACAGCTCATCCC-CTA-CTTTTTCAACAGTAGTGGGTTCGGTCCTTCAGCGGATA-TT 279 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || | ||||| ||||||| |||| || |||||| | |||||| |||||||| ||| | | Sbjct 278 ACTCCACCTT-CAACCTGGCCAT-GGCTAGATCACTCGGTTT-CGGGTCTAATTC--ATC 224 Query 129 GA-CTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGC 184 | ||| | ||||||| | ||||||||||| |||||||||| | |||| | |||||| Sbjct 223 TAACTAAAATCGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTAACGGCTTAAGC 165 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || || | ||| |||||||||||||||||||||||||||||||| ||||| |||| | Sbjct 164 TT-GCTAGATAAACTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACAGAACATA 106 Query 245 ---GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 || ||||| |||||||||| |||| |||||||||| |||||||||||||||| | Sbjct 105 AATGTCTGCTCCGACTGCTTGTAAGCATTCGGTTTCAGG-TCTATTTCACTCCCCTTGTC 47 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 |||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 46 GGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTC 1 >seq93959 Length=1071 Score = 91.5 bits (100), Expect = 4e-16 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||||||||||||||| ||||||||||||||| | |||| |||| ||| |||| ||| Sbjct 1 TTTCCCTCACGGTACTTGTTCACTATCGGTCACTAGAGAGTACTTAGGCTTAGAGGGTGG 60 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||| || |||| ||| |||| |||| ||| | ||||| Sbjct 61 TCCCCCTATGTTCAAACAGGATTTCACGTGTCCCGCCTTACTC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240418853504