Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq40021 417 3e-114 seq20494 257 5e-66 seq41185 113 1e-22 seq51708 84.2 7e-14 seq33860 82.4 2e-13 >seq40021 Length=6160 Score = 417 bits (462), Expect = 3e-114 Identities = 272/298 (91%), Gaps = 1/298 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| || ||||||| | || | |||| | || ||||||||||||||||| Sbjct 2910 CTCCCACCTATACTGCACCTCTTATATCGCCTTACAATGCCGAACTAGAGTCAAGCTCAA 2851 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 2850 CAGGGTCTTCTTTCCCCGCTAGTGTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 2791 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2790 ATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 2731 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC-GCTTG 475 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 2730 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGGCTTG 2671 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2670 CTTGAATTTCTTCACGTTGACATTCAGAGAACTGGGCAGAAATCACATTGTGTCAACA 2613 >seq20494 Length=14513 Score = 257 bits (284), Expect = 5e-66 Identities = 216/264 (82%), Gaps = 11/264 (4%) Strand=Plus/Plus Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||| | || |||||||| |||||||| |||||||||||||||| | |||||| Sbjct 8773 ACAATGCCGAACTAGAGTTAAGCTCAATGATGTCTTCTTTCCCCGCTAGTGTTTCCAAGC 8832 Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 | | | |||| |||| ||||| ||| |||||||||||||| || | |||||||||||| Sbjct 8833 CAAT-CTCTTGACTGTAGTTTCACTAAATAGTAGATAGGGAAAGAGAAAATCTCGTTAAT 8891 Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 |||||| || |||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 8892 CCATTCCTGTGCGTCACTAATTAGATGACGAGACATTTGGCTACCTTATGAGAGTCATAG 8951 Query 450 TTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTG 509 |||| ||| || ||||| |||||||||||||| |||||||||||||||| | Sbjct 8952 TTACACCC------TA----AGCTTGCTTGAATTTCTTCACATTGACATTCAGAGCACCG 9001 Query 510 GGCAGAAATCACATTGCGTCAACA 533 |||||||||||||| ||||||| Sbjct 9002 GGCAGAAATCACATGATGTCAACA 9025 >seq41185 Length=7120 Score = 113 bits (124), Expect = 1e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||||||||||| |||||| | |||||||||||| |||| || | ||||||| | || ||| Sbjct 4653 AATCTCGTTAAACCATTCGTACGCGTCACTAATAAGATAACAAAGCATTTGACAACATTA 4594 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||| ||||||| |||||||||| |||| Sbjct 4593 AGAGAGTCATAGCTACTCCCACCGTTTACCCATGCTT 4557 >seq51708 Length=10527 Score = 84.2 bits (92), Expect = 7e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||| |||||||||||| | || | |||| | |||| |||||||||||||||| Sbjct 7863 TCAACAATGTCTTCTTTCCCAGATGGTGTTTTCAAGGCTGTTCTCTTGGCTGTGGTTTCG 7922 Query 353 CTAGATAGTAGATAGGGACAG 373 ||||| ||||||||||||||| Sbjct 7923 CTAGACAGTAGATAGGGACAG 7943 >seq33860 Length=1860 Score = 82.4 bits (90), Expect = 2e-13 Identities = 139/197 (71%), Gaps = 17/197 (9%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||| ||| |||||| ||| | ||| ||| || || |||||||| ||||||| Sbjct 880 GCTCGCACATATTCTGCACTTTTCATATCACCTC-------CGAACTAGAGTAAAGCTCA 932 Query 296 ACAGG-GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||| | ||||||| | | || |||| ||||||| ||||| |||| | | Sbjct 933 ACAACAGCCTTCTTTTAGTGTTTTTT-----AAGCTCGTTCCCGAAGCTGTAGTTTTGTT 987 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 | | | ||| || ||||| |||||||||||| |||||| | ||||| || ||||| Sbjct 988 ATAGA-TAGC-AGCGACAGAAAAAATCTCGTTAATTCATTCA--CACGTCAGTACTTAGA 1043 Query 415 TGACGAGGCATTTGGCT 431 |||| |||||||||||| Sbjct 1044 TGACAAGGCATTTGGCT 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633644417888