Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq80886 257 5e-66 seq46972 248 3e-63 seq61316 147 7e-33 seq67708 82.4 2e-13 >seq80886 Length=1774 Score = 257 bits (284), Expect = 5e-66 Identities = 212/252 (84%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 261 AGTTATTATGAATCACCAAGGAGCCCCG----AAGG--GCGTTGGTTTTTTATCTAATAA 314 |||||| |||||||| || |||| || ||| |||| | ||||||||||||| Sbjct 655 AGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTCGACCTTTTATCTAATAA 712 Query 315 ATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTT 373 || || ||||||| ||||||||||||| | ||| ||||||||||||||||||| |||||| Sbjct 713 ATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTT 772 Query 374 ATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTT 433 |||| |||| || ||| |||||| |||| ||||||||||||||||||||||||||||| Sbjct 773 ATCCGAGTAGCAAA-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTT 831 Query 434 TCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||| || | ||| || ||||||| ||||||||||||||||||||||||||||||||| Sbjct 832 TCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATAT 891 Query 493 GACTACTGGCAG 504 |||||||||||| Sbjct 892 GACTACTGGCAG 903 Score = 172 bits (190), Expect = 2e-40 Identities = 111/120 (93%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 59 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 117 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 177 >seq46972 Length=3402 Score = 248 bits (274), Expect = 3e-63 Identities = 177/201 (88%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGG-GATTGGGTAATTTGCGCGCCTGCTGCCTTC 101 ||||| | |||||||||||||||| |||| ||||||||||||| |||||||||||||||| Sbjct 1518 TATTTCTCGTCACTACCTCCCCGT-TCGGAGATTGGGTAATTTACGCGCCTGCTGCCTTC 1576 Query 102 CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTT 161 |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1577 CTTGGATGTGGTAGCCATTTCTTAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTC 1636 Query 162 ACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT 221 |||||| | |||||||||| || |||| |||||||| | ||||||||||||||| |||| Sbjct 1637 ACCCGTAGCCACCATGGTAGTCCTCTATACTACCATCAATAGTTGATAGGGCAGATATTT 1696 Query 222 GAATGAACCATCGCCGGCTCA 242 ||| || | ||| ||| ||| Sbjct 1697 GAAAGATCTGTCGTCGGTTCA 1717 >seq61316 Length=1951 Score = 147 bits (162), Expect = 7e-33 Identities = 120/142 (85%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 58 CCTCCCCGTGTCGG-GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| || Sbjct 1784 CCTCCCCGT-TCGTAGATTGGGTAATTTACGCGCCTGTTGCCTTCCTTGGATGTGGTGGC 1842 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCAT 176 | ||||| ||||||| ||||| |||||||| ||| ||||||||| | |||| | ||||| Sbjct 1843 CATTTCTTAGGCTCCTTCTCCAGAATCGAA-CCTGATTCCCCGTCAACCGTAGCCACCAT 1901 Query 177 GGTAGGCCACTATCCTACCATC 198 ||||| || | | |||||||| Sbjct 1902 GGTAGTCCTCAACACTACCATC 1923 >seq67708 Length=4975 Score = 82.4 bits (90), Expect = 2e-13 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 371 GTTATCCATGTAGT--AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 |||||||| ||| || ||| |||| |||| ||| ||| | || |||||| || | Sbjct 3855 GTTATCCAAGTAACTAAAAGTATTATCTTGTAAATTATAGCTGTTATACTGAGCCTTTAG 3914 Query 429 CAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 | ||||||| || | || | ||| |||||||||||||||||| ||||||||||||| Sbjct 3915 CGGTTTCACATTA-ATTCTGTATGTACCTAGACATGCATGGCTTAACCTTTGAGACAAGC 3973 Query 489 ATATGACTACTGGCAG 504 ||| | |||||| || Sbjct 3974 GTAT-ATTACTGGTAG 3988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508963141376