Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1536 316 3e-84 seq1478 309 5e-82 seq6171 282 7e-74 seq2986 163 5e-38 seq4825 111 3e-22 >seq1536 Length=3993 Score = 316 bits (350), Expect = 3e-84 Identities = 242/283 (86%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 1173 TACTGAGCAGGATTACTATCGCAATGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1232 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 1233 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 1292 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| | ||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1293 AATTCTGCTTTGCAATGATAGGAAGAGCCGATATCGAAGGATCAAAAAGCGACGTCGCTA 1352 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 1353 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGATAACTTTTCTGATACCTCTTGCT 1412 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 1413 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 1453 >seq1478 Length=8230 Score = 309 bits (342), Expect = 5e-82 Identities = 239/281 (85%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | ||||| || | |||| ||||||||||||||||||||||| ||||||| Sbjct 3465 CTGAGCAGGATTACTATCGCAATGACGAGTCATCAGTAGGGTAAAACTAACTTGTCTCAC 3524 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||||||||||||||| || | ||||||||||||| |||||| |||| Sbjct 3525 GACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCGAA 3584 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||| Sbjct 3585 TTCTGCTTCGCAATGATAGTAAGAGCCGACATCGAAGAATCAAAAAGCGACGTCGCTATG 3644 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||| |||| |||||||||||||||||| ||||||||||| ||||||| || Sbjct 3645 AACGCTTGGCCGCCATAAGCCAGTTATCCCTGTGATAACTTTTCTGACACCTCTTGCTGA 3704 Query 242 AAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 3705 AAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 3743 >seq6171 Length=3636 Score = 282 bits (312), Expect = 7e-74 Identities = 203/232 (88%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 |||||||||| |||||||||||||||||||||||||||| || | ||||||||||||| | Sbjct 1 ACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGA 60 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 61 CGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGATATCGAAGGATCAAAAAGCG 120 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct 121 ACGTCGCTATGAACGCTTGGCCGCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGACA 180 Query 231 CCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||| || ||| ||| | | | |||||||||||||||| ||||| Sbjct 181 CCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 230 >seq2986 Length=3172 Score = 163 bits (180), Expect = 5e-38 Identities = 125/146 (86%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1 ATAGGAAGAGCCGATATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCA 60 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGA 254 ||||||||||||||||||| ||||||||||| || |||| || ||| ||| | | Sbjct 61 CAAGCCAGTTATCCCTGTGATAACTTTTCTGACATCTCTTGCTGAAAACTCTTCAA--GC 118 Query 255 CTAAAGGATCGATAGGCCACACTTTC 280 | |||||||||||||||| ||||| Sbjct 119 CAAAAGGATCGATAGGCCGTGCTTTC 144 >seq4825 Length=2448 Score = 111 bits (122), Expect = 3e-22 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 93 TACTGAGCAGGATTACTATCGCAATGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 34 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 | |||||||||||||||||||||||||||| || Sbjct 33 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854296310016