Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq5857 187 6e-45 >seq5857 Length=3962 Score = 187 bits (206), Expect = 6e-45 Identities = 188/242 (78%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 154 CCAGCGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCAC 213 ||||||| ||||| ||| |||||||||||||||| ||||||| ||| |||||| | Sbjct 2174 CCAGCGCGATCTCCTTCACCACCTTGCGGCAGATCTTGGCGATCTCGCGTTCCAGGTTGC 2115 Query 214 GCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAAT- 272 |||| || | |||||| ||||||||||| |||||||| |||||| | ||| | || Sbjct 2114 GCACGCCCGATTCGCGCGTGTAGTAGCGCACGATGTCCTGGATCGCATC-ACTGCCGATC 2056 Query 273 TCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATG 332 || | || || || |||||| |||||| |||||||| ||| | ||||| | || Sbjct 2055 TCCAGTTCTTCCGGCTGCAGGCCGTTGGCCTTGATCTGCTTCGGCACCAGGTAGCGGGTG 1996 Query 333 GCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCC 392 |||||||||| ||||||||| |||||||| || || | ||| ||||||||||| |||||| Sbjct 1995 GCGATGTTGAGCTTCTCGTCCTCGGTGTAGCCGGGGATGCGGATCACTTCCATGCGGTCC 1936 Query 393 AG 394 || Sbjct 1935 AG 1934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158259416576