Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_007189.1 Length=6907 Score E Sequences producing significant alignments: (Bits) Value seq1833 520 4e-144 seq1835 134 6e-28 >seq1833 Length=3524 Score = 520 bits (576), Expect = 4e-144 Identities = 392/461 (85%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 2167 GATGAGATCGCGGCATGATTGAGTTTGACCCGCACCACCGTATCGACTTGACCGGCCCTT 2226 ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| Sbjct 2759 GATGAGATCGCGGCATGATTGAGTTCGACCCGCACCACCGTATTGACCTGACCGGCCCTT 2700 Query 2227 GGGCCGGTTTTTCTTTCCTCGGTGATCGTCTGATCACGCCCGAAGGCCGCGAGCTACTTC 2286 |||||||||||||||||||||||||||| |||||||| || || || |||||||| | Sbjct 2699 GGGCCGGTTTTTCTTTCCTCGGTGATCGCCTGATCACTCCTGAGGGTCGCGAGCTGGAGC 2640 Query 2287 CTGAAGATCTGGCCTGGCTGTCACTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGA 2346 | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2639 CGCAGGATCTGGCCTGGCTGTCGCTCACCGCCTGCCAAGCGCAGGAATGGCGCCGGATGA 2580 Query 2347 TGGAAGCTGCACGCTCGGTGCCGTCGATCGACAGTTCCAAGCGTGGTGGCAATCTTCCTG 2406 |||||||||| || ||| |||||||||||||||||||||| || |||||| | Sbjct 2579 TGGAAGCTGCCCGTGCGGCGCCGTCGATCGACAGTTCCAAGAATGTACGCAATCGCGACG 2520 Query 2407 CAGTAACGTGGGATCGTCCTGCCACTGTCGTCAATCTGCGGGACGTGGTGAGCCGGCGCA 2466 | | | | | ||||||||||||||||||||||||||||| || || |||| |||| Sbjct 2519 CCGGCATTCGCCAGCGTCCTGCCACTGTCGTCAATCTGCGGGATGTTGTAAGCCAACGCA 2460 Query 2467 AACAGCGGTCGGCGGTGGCGATGGCTGGCCCTGACGCCGAGCCACCAGCGGTAGACCTGC 2526 ||||||| |||||||||||||||||||| || |||||||||||| | || | |||||| | Sbjct 2459 AACAGCGTTCGGCGGTGGCGATGGCTGGACCCGACGCCGAGCCAGCCGCAGCAGACCTAC 2400 Query 2527 CGATACTGGGGCCCATGCCTCGCCAGCGCGTGTGAGGCGCTTCCGTAGGGGCGCTGCCCC 2586 || || |||||| | || ||| ||||||||||| ||| |||||||||||||||||||| Sbjct 2399 CGGAACCGGGGCCAAAGCGCCGCGAGCGCGTGTGAAGCGTTTCCGTAGGGGCGCTGCCCC 2340 Query 2587 TACACCCCGGATCACTGCTCCCGACAGCGTAACCATCCGCC 2627 |||||||||| ||| ||||| || ||||| | |||| |||| Sbjct 2339 TACACCCCGGTTCATTGCTCGCGGCAGCGCAGCCATTCGCC 2299 >seq1835 Length=3957 Score = 134 bits (148), Expect = 6e-28 Identities = 143/185 (77%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1129 GGTCCAGCCCGAGGCGGCCAGTTCGGCGCGTGCCTGGGCGACGATGGCCGCTTCCTTAGC 1188 ||||||||| | |||||||||||||||||||||||||| |||| ||||||||| | | Sbjct 2577 GGTCCAGCCGGTTGCGGCCAGTTCGGCGCGTGCCTGGGCTACGAAGGCCGCTTCGT--GT 2634 Query 1189 GCGCTG-GAC-GGCGGCACGATCACGCCGGTCCAGCAGCCACGACACGATGCGAGCGGCA 1246 |||||| ||| ||||| |||||||||| || |||||| |||| ||| Sbjct 2635 GCGCTGCGACGGGCGGACTCCCCACGCCGGTCGAGGCACCACGAAACGAGTTTGGCGCTG 2694 Query 1247 CCGATGGAGACGACCGCAATGGACGCAAGCAGCACGAAGGTAATCAACGGGTCGATCATG 1306 || ||||| ||| || | |||| ||| ||||||||||||| ||| ||||| |||||||| Sbjct 2695 CCAATGGATACGGCCACGATGGCCGCCAGCAGCACGAAGGCAATGAACGGATCGATCATC 2754 Query 1307 CCGGC 1311 || || Sbjct 2755 CCTGC 2759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21984198087584