Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq2842 233 5e-57 >seq2842 Length=3006 Score = 233 bits (258), Expect = 5e-57 Identities = 509/757 (67%), Gaps = 4/757 (1%) Strand=Plus/Plus Query 37688 GAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGC 37747 ||| |||||| ||| || ||||| || || ||| || | ||||||||| | Sbjct 1330 GAACACGGCGCCGAGAAGAGCGACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGG 1389 Query 37748 CAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATC 37807 ||| | |||||| || | | || || || ||||| || || || || || |||| | Sbjct 1390 CAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1449 Query 37808 CGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTG 37867 ||||| ||||| | || ||||| ||||| | || ||||| || ||| || |||| || Sbjct 1450 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1509 Query 37868 CAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCG 37927 |||| || ||| ||| ||||| |||||||| ||||| || ||||| ||||||||| Sbjct 1510 AAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCG 1569 Query 37928 ATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC 37987 | |||||| ||| ||||| ||| || ||||| ||||||||||| Sbjct 1570 GTCTACGGCAGGCAGTGGCGAAGCTGGGCCACCGCTGACGGCCGCGAGATCGACCAGAT- 1628 Query 37988 GCA-TGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGC 38046 ||| ||| | || || |||||||| || || || |||| ||||||||| |||| ||||| Sbjct 1629 GCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCTGGTGGTCAGCGC 1688 Query 38047 TTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTT 38106 ||||| || | || | ||||| |||| |||||| || || || ||||| Sbjct 1689 CTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTGTTCCAGTT 1748 Query 38107 CTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTT 38166 ||| || | ||||| | | ||| | | | |||||| || ||| | || | Sbjct 1749 CTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCT 1808 Query 38167 AGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATG 38226 || ||||||| |||||||| |||||||||||| |||| || ||||| || || Sbjct 1809 CGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCAC 1868 Query 38227 CGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCA 38286 || | ||| || || || || | || || |||| || ||||| || || Sbjct 1869 CGGCCTGGGCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCA 1928 Query 38287 TCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCT 38346 | || || || ||||||| |||| || |||||| ||||||||| ||| | | Sbjct 1929 CTTCGAGCAGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCTGTGGTT 1988 Query 38347 GAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCT 38405 ||| |||| | ||| | | || | || | | ||||||| | |||| ||| | Sbjct 1989 GAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGGT 2047 Query 38406 ACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGT 38442 |||| ||||| |||||||| || || ||||||||||| Sbjct 2048 ACGACCCGCACCCGGCGATCAAGGCGCCGGTGGCGGT 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130621172816400