Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_009552.2
Length=40863
Score E
Sequences producing significant alignments: (Bits) Value
seq2842 233 5e-57
>seq2842
Length=3006
Score = 233 bits (258), Expect = 5e-57
Identities = 509/757 (67%), Gaps = 4/757 (1%)
Strand=Plus/Plus
Query 37688 GAAAACGGCGTCGAAAAAGAAGACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGC 37747
||| |||||| ||| || ||||| || || ||| || | ||||||||| |
Sbjct 1330 GAACACGGCGCCGAGAAGAGCGACCGCACCGGTACCGGTACCCGCAGCGTGTTCGGCTGG 1389
Query 37748 CAGCTCCGCTTCAACTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATC 37807
||| | |||||| || | | || || || ||||| || || || || || |||| |
Sbjct 1390 CAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 1449
Query 37808 CGCTCCATCATTTATGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTG 37867
||||| ||||| | || ||||| ||||| | || ||||| || ||| || |||| ||
Sbjct 1450 CGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTG 1509
Query 37868 CAGGAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCG 37927
|||| || ||| ||| ||||| |||||||| ||||| || ||||| |||||||||
Sbjct 1510 AAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACCTCGGCCCG 1569
Query 37928 ATTTACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC 37987
| |||||| ||| ||||| ||| || ||||| |||||||||||
Sbjct 1570 GTCTACGGCAGGCAGTGGCGAAGCTGGGCCACCGCTGACGGCCGCGAGATCGACCAGAT- 1628
Query 37988 GCA-TGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGC 38046
||| ||| | || || |||||||| || || || |||| ||||||||| |||| |||||
Sbjct 1629 GCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCTGGTGGTCAGCGC 1688
Query 38047 TTGGAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTT 38106
||||| || | || | ||||| |||| |||||| || || || |||||
Sbjct 1689 CTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTGTTCCAGTT 1748
Query 38107 CTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTT 38166
||| || | ||||| | | ||| | | | |||||| || ||| | || |
Sbjct 1749 CTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCT 1808
Query 38167 AGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATG 38226
|| ||||||| |||||||| |||||||||||| |||| || ||||| || ||
Sbjct 1809 CGGTGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCAC 1868
Query 38227 CGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCA 38286
|| | ||| || || || || | || || |||| || ||||| || ||
Sbjct 1869 CGGCCTGGGCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCA 1928
Query 38287 TCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCT 38346
| || || || ||||||| |||| || |||||| ||||||||| ||| | |
Sbjct 1929 CTTCGAGCAGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCCGACGCTGTGGTT 1988
Query 38347 GAA-ACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTGAAATCGTCGGCT 38405
||| |||| | ||| | | || | || | | ||||||| | |||| ||| |
Sbjct 1989 GAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGGT 2047
Query 38406 ACGATCCGCATCCGGCGATTAAAGCACCGGTGGCGGT 38442
|||| ||||| |||||||| || || |||||||||||
Sbjct 2048 ACGACCCGCACCCGGCGATCAAGGCGCCGGTGGCGGT 2084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130621172816400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |