Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq7345 91.5 5e-14 >seq7345 Length=15758 Score = 91.5 bits (100), Expect = 5e-14 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 46062 TCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGCATCTGGGACGGCA 46121 |||| |||||| || || || ||||| | || | ||| ||||||||||||||||| Sbjct 8005 TCCAAGTGCCGAGCAATTACGATCCGGAGACCCGGGCCTACCTCGGCATCTGGGACGGCA 8064 Query 46122 GCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACATGCTGACTCACC 46181 |||||| ||| | | | ||||||||| |||| | | ||||| |||| || Sbjct 8065 CGATGAAACAGGCCTGGACCGACAACCCGGTCTGGCACACCTACGACATCGTGACCAACG 8124 Query 46182 CGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGAT-GTGGACAAGTGGGCGCTGTAT 46240 |||| ||| |||| |||||| | ||| |||| || ||| |||| | |||| Sbjct 8125 ATCGCTTCGGTGTGGGTAAACGCATCAAGGC-CTGGATGGTAGACCGTTGGGAGATGTAC 8183 Query 46241 GCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCACAGAGCCGCG 46299 ||| | ||||||||||||||| |||| || ||||| || ||| |||||||| Sbjct 8184 CGGATTTCCCAGTACTGCGACCAGTTGGTGCCGGATGGGAAGGGTGGCCAGGAGCCGCG 8242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175520301245856