Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq2842 168 1e-36
seq5857 86.0 1e-11
>seq2842
Length=3006
Score = 168 bits (186), Expect = 1e-36
Identities = 162/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 196155 TCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAAC 196214
||||| |||||||||||||| || | || || ||||||||||||||||| ||||| |
Sbjct 1382 TCGGCTGGCAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGC 1441
Query 196215 TCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCA 196274
| || ||||| || ||||| || || |||||||||||||| || || ||||||||||||
Sbjct 1442 TGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCG 1501
Query 196275 AGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACC 196334
|||||||| |||||| || |||||| |||||||||| |||| || |||
Sbjct 1502 GCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACC 1561
Query 196335 TGGGGCCGGTTTACGGTAAGCAGTGGCG 196362
| || ||||| ||||| | |||||||||
Sbjct 1562 TCGGCCCGGTCTACGGCAGGCAGTGGCG 1589
Score = 118 bits (130), Expect = 2e-21
Identities = 216/313 (69%), Gaps = 10/313 (3%)
Strand=Plus/Plus
Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843
|| |||||||| ||||| || | || || ||||||||||| ||||||||||||||
Sbjct 1774 TGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAGC 1833
Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899
||||| |||||| |||||||||||||| || || | ||| |||||| ||
Sbjct 1834 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGG----CCTGGGCGTGGGCGACTT 1889
Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959
||| || ||||||| ||| | ||||| || ||| | || |||| || ||
Sbjct 1890 CGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCACTTCGAGCAGGCCCGCGAGCA 1949
Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG-TA 197018
|||||| ||| ||||| ||| |||||||||| || | ||| | | ||| |
Sbjct 1950 GCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT-GTGGTTGAACCCGGAGGTGACCGACC 2008
Query 197019 TCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTA 197078
| |||| | | | ||||| ||| || | | || ||||| ||||| |||||||| |
Sbjct 2009 TGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGGTACGACCCGCACCCGGCGATCA 2068
Query 197079 AAGCCCCGGTGGC 197091
| || ||||||||
Sbjct 2069 AGGCGCCGGTGGC 2081
>seq5857
Length=3962
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856
|||||||||||||||||||| || ||||||||||| | |||||||||||||| ||||||
Sbjct 3547 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3606
Query 3857 CAGTCCTGCCAT 3868
| | | |||||
Sbjct 3607 CCGCTCCGCCAT 3618
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856
|||||||||||||||||||| || ||||||||||| | |||||||||||||| ||||||
Sbjct 3707 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3766
Query 3857 CAGTCCTGCCAT 3868
| | | |||||
Sbjct 3767 CCGCTCCGCCAT 3778
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856
|||||||||||||||||||| || ||||||||||| | |||||||||||||| ||||||
Sbjct 3872 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3931
Query 3857 CAGTCCTGCCAT 3868
| | | |||||
Sbjct 3932 CCGCTCCGCCAT 3943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771425357017920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |