Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq2842 168 1e-36 seq5857 86.0 1e-11 >seq2842 Length=3006 Score = 168 bits (186), Expect = 1e-36 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 196155 TCGGCGCACAGATGCGCTTCGATCTGCAAGACGGATTCCCGCTGGTCACCACGAAGAAAC 196214 ||||| |||||||||||||| || | || || ||||||||||||||||| ||||| | Sbjct 1382 TCGGCTGGCAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAGC 1441 Query 196215 TCCATCTGCGTTCCATCATTCATGAACTGCTGTGGTTCCTCAACGGGGACACCAACATCA 196274 | || ||||| || ||||| || || |||||||||||||| || || |||||||||||| Sbjct 1442 TGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCG 1501 Query 196275 AGTACCTGAATGACAACGGTGTCTCTATCTGGAACGAGTGGGCGAACGAACTCGGTAACC 196334 |||||||| |||||| || |||||| |||||||||| |||| || ||| Sbjct 1502 GCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGAGAATGGCGACC 1561 Query 196335 TGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 | || ||||| ||||| | ||||||||| Sbjct 1562 TCGGCCCGGTCTACGGCAGGCAGTGGCG 1589 Score = 118 bits (130), Expect = 2e-21 Identities = 216/313 (69%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 196784 TGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGCGTCT 196843 || |||||||| ||||| || | || || ||||||||||| |||||||||||||| Sbjct 1774 TGCCAGCTGTACCAGCGCAGCGGTGACATCTTCCTCGGTGTGCCGTTCAACATCGCCAGC 1833 Query 196844 TACGCATTGCTGATTCACATGGTGGCGCA----ACAGGTTAACATGGTACCGGGCGAGTT 196899 ||||| |||||| |||||||||||||| || || | ||| |||||| || Sbjct 1834 TACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGG----CCTGGGCGTGGGCGACTT 1889 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 ||| || ||||||| ||| | ||||| || ||| | || |||| || || Sbjct 1890 CGTGCATACGCTGGGTGACGCGCACCTGTACTCGAACCACTTCGAGCAGGCCCGCGAGCA 1949 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAG-TA 197018 |||||| ||| ||||| ||| |||||||||| || | ||| | | ||| | Sbjct 1950 GCTGTCGCGTGAACCGCGCGCGCTGCCGACGCT-GTGGTTGAACCCGGAGGTGACCGACC 2008 Query 197019 TCTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTA 197078 | |||| | | | ||||| ||| || | | || ||||| ||||| |||||||| | Sbjct 2009 TGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGGTACGACCCGCACCCGGCGATCA 2068 Query 197079 AAGCCCCGGTGGC 197091 | || |||||||| Sbjct 2069 AGGCGCCGGTGGC 2081 >seq5857 Length=3962 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 3547 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3606 Query 3857 CAGTCCTGCCAT 3868 | | | ||||| Sbjct 3607 CCGCTCCGCCAT 3618 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 3707 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3766 Query 3857 CAGTCCTGCCAT 3868 | | | ||||| Sbjct 3767 CCGCTCCGCCAT 3778 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||| || ||||||||||| | |||||||||||||| |||||| Sbjct 3872 GTAGTTCAGCTGGTTAGAATGCTGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGTCCCGT 3931 Query 3857 CAGTCCTGCCAT 3868 | | | ||||| Sbjct 3932 CCGCTCCGCCAT 3943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771425357017920