Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_032851.1 Length=6891 Score E Sequences producing significant alignments: (Bits) Value seq654 98.7 4e-17 >seq654 Length=24196 Score = 98.7 bits (108), Expect = 4e-17 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 1755 GTGTTGGATTAGATCGGAACAAACATCATGGGAAGATTGTGATGACGGAAATGGGGGATG 1814 ||||||||||||| || || ||||| ||||| || || | | || || || || | | Sbjct 2525 GTGTTGGATTAGACCGAAATAAACACCATGGAAAAATACTCCTAACAGACATCGGAAAGG 2584 Query 1815 AAATGACTAGGGCTTTACGGGATCCTGAAGACAAAACAGGTCTGATAAATTTAAACCGGA 1874 ||| | || | || | ||||| ||||| || |||||||| | || | Sbjct 2585 CGATGCAAAAAGCGGGCAGAGACTCAGAAGATAAAACCGGCCTGATAAACCTTAATAGAT 2644 Query 1875 GTAGAAATATATATAACTATATCGTAGGAGGAGGAAGTCTCGCTCAGAGTGTTAATCATT 1934 |||| ||| | |||||||| || ||||||| | || || || ||||| || ||| Sbjct 2645 CCAGAACTATCTTCAACTATATTGTTGGAGGAGCGGGACTAGCCCAAAGTGTCAA-CATA 2703 Query 1935 GTAACTCG-AGTGATTGGAGAGAACTGGGCCTCAGGATATGTTTATATGACGATCTAAGA 1993 |||| ||||||||||| ||||||||| | | ||| ||||| ||||||||| || | Sbjct 2704 TGCCCTCGCAGTGATTGGAGGGAACTGGGCTTAAAGATCTGTTTGTATGACGATTTACGT 2763 Query 1994 GAGAGAAGATTTACACAGCCTAC 2016 || | ||||| || || || || Sbjct 2764 GAAAAGAGATTCACGCAACCCAC 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21933005077920