Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_033055.1 Length=12513 Score E Sequences producing significant alignments: (Bits) Value seq11598 116 3e-22 >seq11598 Length=139995 Score = 116 bits (128), Expect = 3e-22 Identities = 278/410 (68%), Gaps = 24/410 (6%) Strand=Plus/Plus Query 8032 GGAGGAATGGAAGGAATGAGACAAAAGCTATGGACTATAATAACAATTGCAATTATCAAG 8091 |||||||||||||||||||||||||| | ||||| || |||||||| | || ||| Sbjct 9905 GGAGGAATGGAAGGAATGAGACAAAAATTGTGGACAATTATAACAATACGCTTAATAAAG 9964 Query 8092 TATTCAGCAGAAACATTAAATCTCAGAATTACAG---TTATTGGACAAGGAGATAACCAA 8148 | | |||||| || | ||| | || || || |||| | ||||||||||||||| Sbjct 9965 TTTACAGCAGGAAAAAACAATTT---AACTATAGATATTATGTGTCAAGGAGATAACCAA 10021 Query 8149 GTAGTGTTAATTAAATATA------GAGAGGATCAGATCGATAAAAAA-TCAGAATTGAG 8201 || || ||||| | ||||| ||| | | |||| ||||||| | | |||| || Sbjct 10022 GTTGTCTTAATCAGATATAAACCTGAAGAAGTTAAGAT---TAAAAAATTAATAATTAAG 10078 Query 8202 AAATAGATTTTTACAATTGCTTAA--GACCAATTTTTTAGCAGTAAACCTTAAGTTAAAA 8259 | | ||||||| | || || | | ||||| || ||| ||||| || ||| Sbjct 10079 GGAGAAATTTTTAGA--TGATTTATCAAATAATTTAGAAGAAGTTAACCTCTCTTTGAAA 10136 Query 8260 TTATCAGAAACATGGATCTCCA-AGAACTTATTTGAGTATGGTAAAGTAAGGTATTATAA 8318 || |||||| | | | || | | |||| | ||||| ||| ||| |||| |||| | | Sbjct 10137 CTAGAAGAAACTTAGTTTTCAATAAGACTT-TGTGAGTTTGGAAAAATAAGATATTTTGA 10195 Query 8319 AGGTGAAGCAATTAG-TCAGACAACAAAGAAGATCTCAAGATTAATACCTGATATTAATG 8377 || || | ||||| |||| ||| ||||| || | || | | || ||||| |||| Sbjct 10196 TGGAAAATCTATTAGTTCAG-GAACTAAGAAAATATACCGAATGGTTCCAGATATAAATG 10254 Query 8378 ATGGTATCAGCTCATTTATGTCCTCTCTCAGTACAATTAATACCATTACT 8427 |||| | | ||| | | || || || ||| |||||||| || ||| Sbjct 10255 ATGGAGTATGTTCAATATTATCATCACTATTTACTATTAATACAATAACT 10304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39920948848608