Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_033327.1 Length=6873 Score E Sequences producing significant alignments: (Bits) Value seq711 150 8e-33 >seq711 Length=25025 Score = 150 bits (166), Expect = 8e-33 Identities = 412/624 (66%), Gaps = 19/624 (3%) Strand=Plus/Plus Query 3830 TTTTAAGCAATATTTATCAGCAAATTATTGGAAAAACTAATAGTCATCTAAAATTGAGAA 3889 || ||| ||||||||||| ||| | | ||| | | ||||||||| ||| ||| | | Sbjct 6267 TTGTAAATAATATTTATCAACAAGTAACTGGTATCAAAAATAGTCATTTAATATTTAAAC 6326 Query 3890 GAAGTAAAGATCACTTTAAAGTTAATTTTTTACATATATTATGCCATTCTGTTTCTATAA 3949 ||||||||| ||||||||| | | |||||||||||||| || || |||| || ||| Sbjct 6327 AAAGTAAAGAGCACTTTAAAATCACTTTTTTACATATATACTGTTATGCTGTCTCAGTAA 6386 Query 3950 TATTTCAAGAATTAGAATTTACAAACACAAGATTTGGCTCAGAAGAAGTATGGACGGTAA 4009 | ||| ||||||||||| | ||| ||| | ||||||||||| | |||| Sbjct 6387 ATTACCAAAAATTAGAATTT-----GATAAG-TTTAGAAGTAAAGAAGTATGGGCTGTAA 6440 Query 4010 CATCTAACTGTACATATTGTACCAAACCGATTAAAGAAACTCCTCTAGTATGCAATATAA 4069 || || || | | ||||| ||||| ||| ||||| || | ||| || | Sbjct 6441 CAACTCCTTGCAATTTTTGTATGAAACCTATTTTTGAAACATCTATTGTAATTAACCCTA 6500 Query 4070 AATATTTAAGAACACGCAAGCTTAGACCTCTATCTCTTACAAATATAGGAAATATTACAG 4129 || | ||| || | || || ||||| || | ||| || | || |||||||| Sbjct 6501 AAGAACTAAAAATAAAAAATATTCGACCTTTAAAAGTGACA---ATTGTAAGTATTACAG 6557 Query 4130 AAAGATTACTTATAACTTCAGTCACTGAATTTGAAAAGACAGGTATAAAAATAGGTGAAA 4189 ||| |||| | |||| | | | | |||||| | | ||||| || |||||| ||||| Sbjct 6558 AAAAATTATTAATAAAATAAATAAAAGAATTTAAGCAAACAGGCATCAAAATAAGTGAAT 6617 Query 4190 TTCCTACTAATCTTACTTATGAAAGAGCATGTGCAGGTGTTATACAAGAATTTATAGACC 4249 | || || | | |||| | |||||| || | ||||||| | ||||| || | Sbjct 6618 TGCCAACAGAATTAGATTATCCCAATGCATGT---GGAGATATACAAAAGTTTATTGATC 6674 Query 4250 AAACATATACAACAAGACAACGAATATCAGAAAGATACGGATTAATAAATATGACGGATG 4309 |||| ||||| | || |||| || || | ||||| | ||| | | | | | Sbjct 6675 AAACGTATACTTCCAGGAGACGATTAACAAAGAGATA---TTCAATCACTGTAA--AAAA 6729 Query 4310 AGGCAAGAGCAGCTCATGTTCATCTCATACCTCAAGGGCGTTCTCGAGACATAGGACAAA 4369 | |||| ||| || ||| | ||| | || | || || |||| ||||||| Sbjct 6730 AATCAAGGGCAATACACACACATTTGATATCCCACCGTAAATCGAGAAACATTGGACAAA 6789 Query 4370 CAGAAATTAAGAACATCAAACCTGAATTTTTAATGAAGTACATAGTACCTAAAATACATT 4429 | ||||||| || |||| | |||| ||||||| | || ||| | || || ||| ||| Sbjct 6790 CTAAAATTAAAAATATCAGTCTTGAAATTTTAATTCAATATATAATTCCAAAGATATATT 6849 Query 4430 -TAGAATTAGTACTATTGTTTCCA 4452 || || || |||| || |||||| Sbjct 6850 GTAAAACTA-TACTGTTATTTCCA 6872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21875412942048