Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10123 131 3e-28 seq11186 102 1e-19 seq19022 98.7 1e-18 seq10350 89.7 8e-16 >seq10123 Length=298872 Score = 131 bits (144), Expect = 3e-28 Identities = 173/227 (76%), Gaps = 15/227 (7%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 |||||||||||||||||| |||| ||||| || |||||| | ||||| |||||| || Sbjct 149472 ACAAAGGGCAGGGACGTAATCAATGCGAG-TTACTGACTCAC--TTACTGGGAATT-CCA 149417 Query 63 CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCAAAGATT- 119 ||| | | ||| || || | | ||||| | || || || | |||| | || Sbjct 149416 AGTTCATGTG-AACCGTTTCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGTTT 149360 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT-GTAGCGCGCGTGC 178 |||||||||| |||| | ||| ||| || ||||| ||| | || ||||||||||||| Sbjct 149359 ACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTCGTTGTAGCGCGCGTGC 149303 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||| ||||||||||||||||||| ||||| || Sbjct 149302 AGCCCAGAACATCTAAGGACATCACAGACCTGTTATTG-CTCAATCT 149257 >seq11186 Length=129078 Score = 102 bits (112), Expect = 1e-19 Identities = 91/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGT-GTAGCGCGCGT 176 |||||||||||| |||| | ||| ||| || ||||| ||| | | | ||||||||||| Sbjct 84138 TTACCCGGACCTCTCGGTCTAGGAAATACAC--GTTGA-TACTTTAATTGTAGCGCGCGT 84082 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||| ||||||||||||||||||||||||||| || ||||| || Sbjct 84081 GCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTA-TGGCTCAATCT 84034 >seq19022 Length=51908 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/109 (83%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACAT-CAGTGTAGCGCGCGT 176 |||||||||||| |||| | ||| | |||| |||||| ||| | || |||||| ||||| Sbjct 48891 TTACCCGGACCTCTCGGTCTAGG--AAAGACACGTTGA-TACTTTCATTGTAGCACGCGT 48835 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || ||||||||| |||||||||||||||||||||||| ||||| || Sbjct 48834 GCACTCCAGAACATTCAAGGGCATCACAGACCTGTTATTG-CTCAATCT 48787 >seq10350 Length=222653 Score = 89.7 bits (98), Expect = 8e-16 Identities = 162/229 (71%), Gaps = 31/229 (14%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||| | |||||| |||| ||| Sbjct 53231 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCACACTTACTGGGAA-TTC 53174 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT--TTCA-AAGA 117 ||| | | |||| || || | | ||||| | || || || | |||| | Sbjct 53173 TAAGTTCATG-TGAACAGTTCCAGTTCACAATCCCAAGCATGA--AAGTGGTTCAGCGGT 53117 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATAC-ATCAGTGTAGCGCGCGT 176 |||||||||||| |||| | || || | || ||||| |||| ||| ||||| Sbjct 53116 TTACCCGGACCTCTCGGTCTAG--GAAATACACGTTG-ATACTTTCATTGTAG------- 53067 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||||| ||||| || Sbjct 53066 -----------CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 53030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751850752205