Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq19022 109 1e-21 seq1 78.8 2e-12 seq9542 77.0 6e-12 >seq19022 Length=51908 Score = 109 bits (120), Expect = 1e-21 Identities = 182/250 (73%), Gaps = 15/250 (6%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| |||||| |||| | ||||||| | ||| |||| || |||| Sbjct 48097 TTACTTTGAACAAATTAAAGTGCTTAAAGCAGACTCCAAATGCCTTAATATTTTGTGCAT 48156 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC--GCCGTAAT 187 |||||||| |||| ||| | | |||||| ||| ||||||| | ||| | | ||||| Sbjct 48157 GGAATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTT-GGATCTAGAGGTAAT 48214 Query 188 GATTAATAG--GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| | || | ||||| | |||||| | |||||||||||||||||| Sbjct 48215 GATTAATAAAAGCATTTT-GGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGA 48273 Query 246 TTTATTGA-AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || | || |||||| |||||||| || |||| ||||||||||||||||| || Sbjct 48274 CC-ATCGTGAGTCTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGA 48331 Query 305 ACGAAAGTTA 314 || ||||||| Sbjct 48332 ACCAAAGTTA 48341 >seq1 Length=2348962 Score = 78.8 bits (86), Expect = 2e-12 Identities = 132/183 (72%), Gaps = 10/183 (5%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---GCCTTTGCTCGAATACATT-AGCAT 130 |||||||||||||||| ||||| | |||||| | ||| ||||| || |||| Sbjct 2265226 TTACTTTGAAAAAATTCGAGTGCT-TAAGCAGTCTCCAAATGCCTGAATATTTTGTGCAT 2265168 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTTGGTTTCTAGGAC-CGCCGTAATG 188 ||||||||| ||| || | | |||||| ||| ||||||| ||| | | |||||| Sbjct 2265167 GGAATAATATAATTAGATCT-CTGTTCTACTTTCATTGGTTTTTAGATCAAGAGGTAATG 2265109 Query 189 ATTAATAGGGATAGTCGGGGGTG--TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||| ||| |||| | | |||||| | || |||||||||||||||| | Sbjct 2265108 ATTAATAGAAGCAGTTTGGGGAGCATTAGTATTACAACGTGAGAGGTGAAATTCTTGAAC 2265049 Query 247 TTA 249 ||| Sbjct 2265048 TTA 2265046 >seq9542 Length=724720 Score = 77.0 bits (84), Expect = 6e-12 Identities = 70/87 (80%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 228 AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATG 287 |||||||||||||||||| |||||||||| |||||||| || |||| |||| Sbjct 665665 AGAGGTGAAATTCTTGGACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATG 665606 Query 288 TTTTCATTAATCAGTGAACGAAAGTTA 314 |||||| |||||| |||||||||||| Sbjct 665605 TTTTCAGTAATCA-AGAACGAAAGTTA 665580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915012502976