Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq19022 129 2e-27 seq9795 111 7e-22 >seq19022 Length=51908 Score = 129 bits (142), Expect = 2e-27 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| ||||||||||| | | |||||| |||||| Sbjct 29747 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCATCTAAAACTAAAT 29806 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| |||||| |||| ||||| ||||||| ||| || | Sbjct 29807 ATAACCATGAGACCGATAGTAAACAAGTGCCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 29866 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||||||||| ||||||||||| Sbjct 29867 AGAGAGTTAAAAAGTACGTGAAATTG 29892 Score = 114 bits (126), Expect = 5e-23 Identities = 103/128 (80%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 || ||| ||||| |||||||||| ||||||||||| | |||| ||| ||||| ||| | Sbjct 30399 AGTATATATGTTGTGACCCGAAAGGTGGTGAACTATACTTGAACAGGTTGAAGTCAGGGA 30458 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| |||| Sbjct 30459 AAAC-CTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTAT 30517 Query 676 AGGGGCGA 683 |||||||| Sbjct 30518 AGGGGCGA 30525 >seq9795 Length=415624 Score = 111 bits (122), Expect = 7e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 || |||| || || || ||||| ||||||||||||| | ||| ||| ||||| ||| | Sbjct 338417 GATCATATATGCTGTGAACCGAACGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 338358 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 338357 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 338298 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 338297 TAGGGGCGA 338289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079560553850