Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22]
20,487 sequences; 750,403,944 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq11186 167 4e-39
seq1 122 1e-25
seq19978 114 2e-23
seq193 107 3e-21
seq10123 98.7 2e-18
seq19022 93.3 7e-17
seq10350 73.4 6e-11
>seq11186
Length=129078
Score = 167 bits (184), Expect = 4e-39
Identities = 97/100 (97%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 83859 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 83800
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||| || |||||||||||||||||||||
Sbjct 83799 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 83760
Score = 93.3 bits (102), Expect = 7e-17
Identities = 82/99 (83%), Gaps = 5/99 (5%)
Strand=Plus/Minus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
|||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| |
Sbjct 84093 TGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTA-TGGCTCAATC 84035
Query 80 TTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116
| ||| | ||| || || | | |||| | ||||||||
Sbjct 84034 T--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGC 83998
>seq1
Length=2348962
Score = 122 bits (134), Expect = 1e-25
Identities = 89/103 (86%), Gaps = 3/103 (3%)
Strand=Plus/Plus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG- 217
||||| ||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 2264740 GTCTCCTTCGTTATCTGAATTAACCAGACAAATCACTTCACGAACTTAGAACGGCCATGT 2264799
Query 218 --CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||| || ||||| ||||||||| ||||
Sbjct 2264800 ATCACCACCAACCATAGATTCGAGAAATAGCTATCAAAGTGTC 2264842
>seq19978
Length=54809
Score = 114 bits (126), Expect = 2e-23
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226
|||||||| ||||||||||| |||||||||||| |||||||||| ||| |||||||||
Sbjct 45336 CGTTATCGCAATTAACCAGATAAATCACTCCACGAACTAAGAACAGCC---CACCACCAC 45280
Query 227 CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||| || |||||||||||||||||||||
Sbjct 45279 CTATAGGTTCGAGAAAGAGCTATCAATCTGTC 45248
>seq193
Length=55713
Score = 107 bits (118), Expect = 3e-21
Identities = 73/82 (89%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || |
Sbjct 39630 GTTTCGTTCGTTATGGGAATTAACCAGACAAATCCCTCCACGAACTAAGAACGGCTATTC 39571
Query 219 ACCACCACCCATAGAATCAAGA 240
||||| ||||||||| || |||
Sbjct 39570 ACCACGACCCATAGATTCGAGA 39549
Score = 75.2 bits (82), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 5/99 (5%)
Strand=Plus/Minus
Query 23 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 82
|||||||||| ||| || |||||||| | ||||||||||||||||||| ||||| ||
Sbjct 39870 AGCGCGCGTGTAGCCTAGGACATCTAATGACATCACAGACCTGTTATTG-CTCAATCT-- 39814
Query 83 CAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
||| | ||| || || | | |||| | |||||||| ||
Sbjct 39813 CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 39775
>seq10123
Length=298872
Score = 98.7 bits (108), Expect = 2e-18
Identities = 85/102 (83%), Gaps = 5/102 (5%)
Strand=Plus/Minus
Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 149316 TGTAGCGCGCGTGCAGCCCAGAACATCTAAGGACATCACAGACCTGTTATTG-CTCAATC 149258
Query 80 TTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
| ||| | ||| || || | | |||| | |||||||| ||
Sbjct 149257 T--CATCGTTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 149218
>seq19022
Length=51908
Score = 93.3 bits (102), Expect = 7e-17
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 48603 GTCTCGTTCGTTTTCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCC 48548
Score = 84.2 bits (92), Expect = 3e-14
Identities = 84/106 (79%), Gaps = 5/106 (5%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||| |||||| ||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 48850 TCATTGTAGCACGCGTGCACTCCAGAACATTCAAGGGCATCACAGACCTGTTATTG-CTC 48792
Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119
|| || ||| | ||| || || | | |||| | |||||||| ||
Sbjct 48791 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 48748
>seq10350
Length=222653
Score = 73.4 bits (80), Expect = 6e-11
Identities = 43/45 (96%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203
||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 52846 GTCTCGTTCGTTATCGGAATTAACCAGACAAATAACTCCACGAAC 52802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796641860847
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |