Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11186 167 4e-39 seq1 122 1e-25 seq19978 114 2e-23 seq193 107 3e-21 seq10123 98.7 2e-18 seq19022 93.3 7e-17 seq10350 73.4 6e-11 >seq11186 Length=129078 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 83859 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 83800 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 83799 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 83760 Score = 93.3 bits (102), Expect = 7e-17 Identities = 82/99 (83%), Gaps = 5/99 (5%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| | Sbjct 84093 TGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTA-TGGCTCAATC 84035 Query 80 TTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 | ||| | ||| || || | | |||| | |||||||| Sbjct 84034 T--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGC 83998 >seq1 Length=2348962 Score = 122 bits (134), Expect = 1e-25 Identities = 89/103 (86%), Gaps = 3/103 (3%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG- 217 ||||| ||||||||| ||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 2264740 GTCTCCTTCGTTATCTGAATTAACCAGACAAATCACTTCACGAACTTAGAACGGCCATGT 2264799 Query 218 --CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||| || ||||| ||||||||| |||| Sbjct 2264800 ATCACCACCAACCATAGATTCGAGAAATAGCTATCAAAGTGTC 2264842 >seq19978 Length=54809 Score = 114 bits (126), Expect = 2e-23 Identities = 81/92 (88%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||| Sbjct 45336 CGTTATCGCAATTAACCAGATAAATCACTCCACGAACTAAGAACAGCC---CACCACCAC 45280 Query 227 CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||| || ||||||||||||||||||||| Sbjct 45279 CTATAGGTTCGAGAAAGAGCTATCAATCTGTC 45248 >seq193 Length=55713 Score = 107 bits (118), Expect = 3e-21 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 || ||||||||||| ||||||||||||||||||| |||||| ||||||||||||| || | Sbjct 39630 GTTTCGTTCGTTATGGGAATTAACCAGACAAATCCCTCCACGAACTAAGAACGGCTATTC 39571 Query 219 ACCACCACCCATAGAATCAAGA 240 ||||| ||||||||| || ||| Sbjct 39570 ACCACGACCCATAGATTCGAGA 39549 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 5/99 (5%) Strand=Plus/Minus Query 23 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 82 |||||||||| ||| || |||||||| | ||||||||||||||||||| ||||| || Sbjct 39870 AGCGCGCGTGTAGCCTAGGACATCTAATGACATCACAGACCTGTTATTG-CTCAATCT-- 39814 Query 83 CAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||| | ||| || || | | |||| | |||||||| || Sbjct 39813 CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 39775 >seq10123 Length=298872 Score = 98.7 bits (108), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| | Sbjct 149316 TGTAGCGCGCGTGCAGCCCAGAACATCTAAGGACATCACAGACCTGTTATTG-CTCAATC 149258 Query 80 TTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 | ||| | ||| || || | | |||| | |||||||| || Sbjct 149257 T--CATCGTTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 149218 >seq19022 Length=51908 Score = 93.3 bits (102), Expect = 7e-17 Identities = 54/56 (96%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 48603 GTCTCGTTCGTTTTCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCC 48548 Score = 84.2 bits (92), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| Sbjct 48850 TCATTGTAGCACGCGTGCACTCCAGAACATTCAAGGGCATCACAGACCTGTTATTG-CTC 48792 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 48791 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 48748 >seq10350 Length=222653 Score = 73.4 bits (80), Expect = 6e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 ||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 52846 GTCTCGTTCGTTATCGGAATTAACCAGACAAATAACTCCACGAAC 52802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796641860847