Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musca_20domestica_20[refseq_20GCF_5F000371365.1_202013-04-22] 20,487 sequences; 750,403,944 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10123 145 1e-32 seq10350 98.7 2e-18 seq11186 95.1 2e-17 seq19022 82.4 1e-13 >seq10123 Length=298872 Score = 145 bits (160), Expect = 1e-32 Identities = 193/260 (74%), Gaps = 11/260 (4%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGC--CGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||| | |||| | || || ||| ||||| || ||||| ||||||||||||| Sbjct 149221 GCTTCTTAAATGGACAAATTGCGTCTAGCAACGATG--AGATTGAG-CAATAACAGGTCT 149277 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 |||||| ||||||||||||||||| |||||||||||||| || || ||||| || | Sbjct 149278 GTGATGTCCTTAGATGTTCTGGGCTGCACGCGCGCTACAACGAAAGTATCAACGTGT--A 149335 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 | ||| | ||| ||||| |||||| | | || | || || |||| ||||| | | | Sbjct 149336 TTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCACTTTCATGCTTGGGATTGTGAA 149395 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 || || || | | | ||| ||||| || ||||| | | |||| | | ||| ||| Sbjct 149396 CTGAAACGGTT-CACATGAACTTGGAATTCCCAGTAA--GTGAGTCAGTAACTCGCATTG 149452 Query 308 ATTACGTCCCTGCCCTTTGT 327 |||||||||||||||||||| Sbjct 149453 ATTACGTCCCTGCCCTTTGT 149472 >seq10350 Length=222653 Score = 98.7 bits (108), Expect = 2e-18 Identities = 155/223 (70%), Gaps = 22/223 (10%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| ||||||||||||||||||||||||||||| |||| Sbjct 53030 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATG------------------CTAC 53070 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 53071 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 53128 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| |||| || |||||| Sbjct 53129 CTTTCATGCTTGGGATTGTGAACTGGAACTGTT-CACATGAACTTAGAATTCCCAGTAAG 53187 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 53188 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 53230 >seq11186 Length=129078 Score = 95.1 bits (104), Expect = 2e-17 Identities = 87/108 (81%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| || ||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 84034 AGATTGAGCCA-TAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 84092 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 | | | || ||||| || || ||| | ||| ||||| |||||| Sbjct 84093 AATTAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAA 84138 >seq19022 Length=51908 Score = 82.4 bits (90), Expect = 1e-13 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||| Sbjct 48787 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTGAATGTTCTGGAGTGCACGCGTGCTAC 48845 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || | ||| | ||| ||||| |||||| | | || | Sbjct 48846 AATGAAAGTATCAACGTGT--CTTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 48903 Query 226 CTGTCGTGCTGGGGAT 241 || | |||| ||||| Sbjct 48904 CTTCCATGCTCGGGAT 48919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947005947136