Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2347 399 7e-109 seq1282 159 1e-36 seq1851 154 5e-35 seq3420 150 6e-34 seq951 141 3e-31 seq574 129 2e-27 >seq2347 Length=330313 Score = 399 bits (442), Expect = 7e-109 Identities = 270/301 (90%), Gaps = 1/301 (0%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCT-CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 || ||||||||||| ||||||||| || ||| |||| | | || |||||| |||| Sbjct 17359 CGACTCCCACTTATGCTACACCTCGGCATGTCTCCGAACAATGCCAGATTAGAGTAAAGC 17418 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 17419 TCAACAGGGACTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 17478 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 17479 CTAGATAGCAGATAGGGACAGTGAGAATCTCGTTAATCCATTCATGCACGTCACTAATTA 17538 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||| || Sbjct 17539 GATGACAAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGATTACCCGAGC 17598 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 17599 TTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATCGTGTCAAC 17658 Query 533 A 533 | Sbjct 17659 A 17659 Score = 111 bits (122), Expect = 5e-22 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| |||| || ||| |||| |||||||||||||||||||| Sbjct 16863 CTTTTGCTCTACGCGAGGTTTCCGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 16922 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC--AACCCGGA 124 ||| |||||||| ||||||||| ||||||||||||||| | |||| || || |||| Sbjct 16923 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCGGTGTCCTCGAAATACGGA 16982 Query 125 TCG 127 ||| Sbjct 16983 TCG 16985 >seq1282 Length=5573 Score = 159 bits (176), Expect = 1e-36 Identities = 120/140 (86%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCT-CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 || ||||||||||| ||||||||| || ||| |||| | | | ||||| ||| | Sbjct 73 CGACTCCCACTTATGCTACACCTCGGCATGTCTCCGAACAATGCCAAATTAGAGACAAAC 132 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 133 TCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 192 Query 353 CTAGATAGTAGATAGGGACA 372 |||||||||||||||||||| Sbjct 193 CTAGATAGTAGATAGGGACA 212 >seq1851 Length=2641 Score = 154 bits (170), Expect = 5e-35 Identities = 119/140 (85%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 234 CGGCTCCCACTTATTCTACACCTCT-CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 || ||||||||||| ||||||||| || ||| |||| | | || ||||||||||| Sbjct 37 CGACTCCCACTTATGCTACACCTCGGCATGTCTCCGAACAATGCCAGATTAGAGTCAAGC 96 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||||||||||||||||||| ||| ||||| || | |||||||||||||||||| Sbjct 97 TCAACAGGGTCTTCTTTCCCCGCTAATTTTTCCAAGACCATACCCTTGGCTGTGGTTTCG 156 Query 353 CTAGATAGTAGATAGGGACA 372 |||||||||||||||||||| Sbjct 157 CTAGATAGTAGATAGGGACA 176 >seq3420 Length=253117 Score = 150 bits (166), Expect = 6e-34 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||| | Sbjct 232994 CCTTAAAAGAGTCATAGTAACTCCTGCCGTTTACCCGCGCTTACTTGAATTTCTTCACGT 232935 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||| ||||||||| Sbjct 232934 TGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 232894 Score = 127 bits (140), Expect = 7e-27 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 245921 GTAGATAGGGACAGTGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 245862 Query 420 AGGCATTTGGCTA 432 ||||||||||||| Sbjct 245861 AGGCATTTGGCTA 245849 >seq951 Length=20361 Score = 141 bits (156), Expect = 3e-31 Identities = 94/103 (91%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 270 ACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGC 329 |||| | | || ||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 26 ACAATGCCAGATTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTTCCAT-C 84 Query 330 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 CCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 127 >seq574 Length=20249 Score = 129 bits (142), Expect = 2e-27 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 9670 AGTAGATAGGGACAGTGAGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 9611 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 9610 GAGGCATTTGGCTA 9597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635134264960