Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myzus_20persicae_20[genbank_20GCA_5F001856785.1_202016-09-19] 4,020 sequences; 347,296,088 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2347 273 7e-71 seq3546 201 3e-49 >seq2347 Length=330313 Score = 273 bits (302), Expect = 7e-71 Identities = 232/282 (82%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 || |||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 22822 GTTCTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 22881 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22882 TCCCCGTTCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 22941 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 22942 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACCACCACGGT 23001 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| |||| |||||||| |||||| ||||||| || | ||||||| Sbjct 23002 AGGCATGGAACCTACCGTCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 23061 Query 240 TC-AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCA 278 | || || |||||| | | |||||||| || |||||| Sbjct 23062 ACGGAGACCGTGCGATCAGCTCGAAGTTATTCAGAGTCACCA 23103 Score = 178 bits (196), Expect = 4e-42 Identities = 138/162 (85%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG-TAAGGTACTATCAAATAAA 402 |||||||||||||||||||||||||| |||||||| ||| | ||||| ||| || || Sbjct 23229 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTTGGGTACGATCTAAGGAA 23288 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACA 462 | | ||||||||||||||||| ||||| ||||||| || | |||| ||| ||||| Sbjct 23289 CCACAACTGATTTAATGAGCCTTTCGCGGTTTCACCTTAATGCG-GCTTGCACTGAGACA 23347 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 23348 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 23389 >seq3546 Length=187496 Score = 201 bits (222), Expect = 3e-49 Identities = 157/188 (84%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 29 GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGC 88 ||| || ||||| ||||| | |||| ||||||||||| ||||| ||| |||||||||| Sbjct 67158 GAGTCCAGTATCGTTATTTTTCGTCATTACCTCCCCGTTCCGGGAGTGGATAATTTGCGC 67099 Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 67098 GTCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCTGGCTCCCTCTCTGGAATCGAACC 67039 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 || ||||||||||||| |||| ||||||| | | |||||| |||| |||||| Sbjct 67038 CTGATTCCCCGTTACC-------ACCACGGTAGGCAAGGAACCTACCGTCGACGGTTGAT 66986 Query 209 AGGGCAGA 216 | |||||| Sbjct 66985 AAGGCAGA 66978 Score = 140 bits (154), Expect = 1e-30 Identities = 134/167 (80%), Gaps = 11/167 (7%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-GTACTATCAAATAAAC 403 ||||||| |||||||| |||||||| |||||||| ||| | |||| ||| || ||| Sbjct 66802 CATGTATAAGCTCTAGTATTACCACAGTTATCCAAGTAACTTGAGTACGATCTAAAGAAC 66743 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TA--GATTGCTTATACTTAGA 460 | ||||||||||||||||| ||| | ||||||| || || |||||| ||| ||| Sbjct 66742 CACAACTGATTTAATGAGCCTTTCACGGTTTCACCTTAATACGGATTGC----ACTGAGA 66687 Query 461 CATGCATGGCTTAATCTTTGAGACAAGC---ATATGACTACTGGCAG 504 ||||||||||||||||||| |||||||| ||||||| |||||||| Sbjct 66686 CATGCATGGCTTAATCTTTAAGACAAGCATAATATGACCACTGGCAG 66640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510339281920