Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq429 219 6e-55 seq689 199 6e-49 seq1719 197 2e-48 seq362 194 3e-47 seq2942 188 1e-45 seq1536 132 7e-29 seq2755 125 1e-26 seq3271 113 7e-23 seq2660 113 7e-23 >seq429 Length=39415 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 9905 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 9848 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 9847 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 9788 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 9787 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 9731 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 9730 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 9674 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 9673 AGCCGCCTGTCCCTCTAA 9656 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 15111 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 15054 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 15053 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 14994 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 14993 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 14937 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 14936 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 14880 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 14879 AGCCGCCTGTCCCTCTAA 14862 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 34999 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 34942 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 34941 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 34882 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 34881 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 34825 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 34824 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 34768 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 34767 AGCCGCCTGTCCCTCTAA 34750 Score = 140 bits (154), Expect = 5e-31 Identities = 170/226 (75%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||| | |||||||||| |||||||||||| |||||| ||||||||| |||||| | Sbjct 2436 GTACAACAGACAGGGACGTAATCAACGCGAGCTC-ATGACTTGCGCTTACTGGGAATT-C 2493 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || |||| ||| | | | |||| | | |||| | || Sbjct 2494 CTTGTTTACGGGGAATAATTACAAGCCCCAGGCATTAGCACGGAGGAGGTTCAGTGGGTT 2553 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| || |||||||| | | |||| | ||| | | | ||||||||||||||||| Sbjct 2554 ACCCGGGCCGGTCGGCCAGG---AAAGACATGCTGATTCCTTTAGTGTAGCGCGCGTGCG 2610 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||||| ||||||||||| ||||||| |||||||| ||||| || Sbjct 2611 GCCCAGAATATCTAAGGGCACCACAGACATGTTATTG-CTCAATCT 2655 >seq689 Length=28852 Score = 199 bits (220), Expect = 6e-49 Identities = 203/255 (80%), Gaps = 11/255 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 19479 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 19536 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || |||||||| | ||||| | ||||| ||| |||| | || Sbjct 19537 CTCGTTCGTGCGAAATAATTGCAAGCCCCAATCCCTAGCACGAAGAAGGTTCAGCGGGTT 19596 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || ||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 19597 ACACGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 19653 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||| |||||||||||||||||| |||||||||||||| |||| || |||| | ||| | Sbjct 19654 GCCAAGAACATCTAAGGGCATCGCAGACCTGTTATTG-TTCAATCT--CGTGCGACTAGA 19710 Query 239 AGGC-CATCTCCCTC 252 || | | | |||||| Sbjct 19711 AGCCGCCTGTCCCTC 19725 >seq1719 Length=8586 Score = 197 bits (218), Expect = 2e-48 Identities = 183/226 (81%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 7022 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 6965 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 6964 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGSAGGTTCAGCGGGTT 6905 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || ||| || ||| | | | ||| ||||||||||||| Sbjct 6904 ACCCGGGCCTTTCGGCCAGGGA---AGATACGCTGATTCCTTTAGTATAGCGCGCGTGCG 6848 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 6847 GCCCGGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 6803 >seq362 Length=31393 Score = 194 bits (214), Expect = 3e-47 Identities = 177/219 (81%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| ||||| |||||||||||| ||||||||||||| | |||| ||| Sbjct 15237 GTACAAAGGGCAGGAACGTAATCAACGCGAGCTCT-TGACTCGCGCTTATT-GGAAATTC 15294 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || ||| ||||||| | ||||| | ||||| ||| |||| | || Sbjct 15295 CTCGTTCAGGAACAATAATTGCAGGCCCCAATCCCTAGCACGAAGAAGGTTCAGCGGGTA 15354 Query 121 -CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||||| || |||| || ||| | | ||||||||||||||||||| Sbjct 15355 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 15411 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 ||||||||||||| ||||||| ||||||||||||||||| Sbjct 15412 GCCCAGAACATCTGAGGGCATGACAGACCTGTTATTGCC 15450 >seq2942 Length=2297 Score = 188 bits (208), Expect = 1e-45 Identities = 200/257 (78%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||| | ||||||||||| ||||||||||| |||| |||||| | Sbjct 2010 GTACAAAGGGCAGAGACGTAATTAACGCGAGCTT-ATGACTCGCGCCTACTGGGAATT-C 2067 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || || |||||| | | ||||| | ||| | | |||| | || Sbjct 2068 CTCGTTTATGAGGAATAATTGCGAGCCCCAATCCCTAGCACATAGGAGGTTCAGCGGGTT 2127 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || |||| || ||| | | |||||| || ||||| ||| Sbjct 2128 ACCCGGGCCTTTCGGCCAGGGA---AGACACGCTGATTCCTTCAGTGYAGYGCGCGYGCG 2184 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 ||||||||||||||||||||||||||||||||||||| ||||| ||| | || ||| || Sbjct 2185 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTTGTGCGG-CTAGAA 2242 Query 240 GGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 2243 GCCGCCTGTCCCTCTAA 2259 >seq1536 Length=12692 Score = 132 bits (146), Expect = 7e-29 Identities = 164/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || | |||| ||| || | ||||||||||||| |||||| | Sbjct 12312 GTACAAAGGGCAGGGACCTAATGAACGTGAG-TTACTTACTCGCGCTTACTGGGAATT-C 12255 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | || |||||| ||||| | || | | | |||| | || Sbjct 12254 CTTGTTCCTGGGAAATCATTGCAGGCCCGAATCCCTAGCATGGAGGAGGTTCAGCGGGTT 12195 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| || |||| |||| |||| | ||| | | ||||||||| ||||||||| Sbjct 12194 ACCCGGGCCTTTCAGCCA--GTGA-AGACATGCTGATTCCTTCAGTGTAGTGCGCGTGCG 12138 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||| ||||||||||||| |||||||||| Sbjct 12137 TCCCAGAACATCTGAGGGCATCACAGATCTGTTATTGC 12100 >seq2755 Length=2649 Score = 125 bits (138), Expect = 1e-26 Identities = 132/168 (79%), Gaps = 9/168 (5%) Strand=Plus/Minus Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 |||| | ||||| ||| |||| | |||||||| ||| ||||||| || |||| Sbjct 736 ATCCGTAGCACGAAGAAGGTTCAGCGGGTTACCCGGGCCTTTCGGCCAGGGA---AGACA 680 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 || ||| | | |||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 679 CGCTGATTCCTTCAGTGTAGCRCGCRTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 620 Query 210 GTTATTGCCTCAAACTTCCGTG-GCCTAAAAGGC-CATCTCCCTCGAA 255 ||||||| ||||| || |||| | ||| ||| | | | |||||| || Sbjct 619 GTTATTG-CTCAATCT--CGTGCGGCTAGAAGCCGCCTGTCCCTCTAA 575 Score = 95.1 bits (104), Expect = 2e-17 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 1846 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 1789 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 | ||| | | ||||||||||| Sbjct 1788 TTTGTTCATGGGGAACAATTGCAA 1765 >seq3271 Length=1844 Score = 113 bits (124), Expect = 7e-23 Identities = 112/141 (79%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 1693 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 1750 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| | | || ||||||| | ||||| | |||| | | |||| || || Sbjct 1751 CTCGTTCATGGAGAATGATTGCAAGCCCCAATCCCTAGCACGGAGGAGGTTCAGCAGGTT 1810 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||||| ||| ||||||| || Sbjct 1811 ACCCGGGCCTTTCGGCCAGGG 1831 >seq2660 Length=2805 Score = 113 bits (124), Expect = 7e-23 Identities = 159/218 (73%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || | |||| ||| || ||||||||||| ||| |||||| | Sbjct 1821 GTACAAAGGGCAGGGACCTAATGAACGTGAG-TTACTGACTCGCGCTCACTGGGAATT-C 1764 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | || | ||||| ||||| | |||| | | |||| | || Sbjct 1763 CTTGTTTCTGGGAAATCACTGCAAGCCCGAATCCCTAGAACGAAGGAGGTTCACCGGGTT 1704 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || | | || || |||| || |||| | ||| | | || |||||| ||||||||| Sbjct 1703 ACTCAGGACT-TCAGCCAGGGA---AGACATGCTGATTCCTTCMGTGTAGTGCGCGTGCG 1648 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||||| ||||||||||||| |||||||||| Sbjct 1647 TCCCAGAACATCTGAGGGCATCACAGATCTGTTATTGC 1610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751967049945