Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq429 80.6 1e-13 seq2755 78.8 5e-13 seq1719 78.8 5e-13 >seq429 Length=39415 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| ||||||| ||| ||| | Sbjct 9336 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCGAGTCATCGGAGGAACTTCGGCG 9277 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 9276 GATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 9220 Score = 80.6 bits (88), Expect = 1e-13 Identities = 88/117 (75%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| ||||||| ||| ||| | Sbjct 34430 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCGAGTCATCGGAGGAACTTCGGCG 34371 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 34370 GATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 34314 >seq2755 Length=2649 Score = 78.8 bits (86), Expect = 5e-13 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| | ||||| ||| ||| | Sbjct 255 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCAAGTCATCGGAGGAACCTCGGCG 196 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 195 GATCGCTAGCTGGCATCGTTTAYGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 139 >seq1719 Length=8586 Score = 78.8 bits (86), Expect = 5e-13 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || ||| |||| | ||||| ||| ||| | Sbjct 6453 GAACCCAAAAGCTTTGGTTTCCCGGAAGCTGCCCGCCSAGTCATCGGAGGAACTTCGGCG 6394 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| |||| ||||| ||||| ||||| |||| | ||||||||||||| |||||| Sbjct 6393 GATCGCTAGCTGGCATCGTTTATGGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 6337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278388194970