Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq429 192 1e-46 seq689 176 8e-42 seq1719 136 7e-30 seq362 89.7 9e-16 seq2755 84.2 4e-14 >seq429 Length=39415 Score = 192 bits (212), Expect = 1e-46 Identities = 218/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 8936 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 8995 Query 100 AAAGCAGGCCTTT---GCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || |||||| | |||||||||||| ||||||||| | |||| Sbjct 8996 AAAGCAGGCTATTTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 9054 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 9055 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 9113 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 9114 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 9173 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||| ||||||| ||||||||||||| || Sbjct 9174 CATTTGCCAAAAATGTTTTCTTTAATCA-AGAACGAAAGTTAGAGG 9218 Score = 192 bits (212), Expect = 1e-46 Identities = 218/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 34020 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 34079 Query 100 AAAGCAGGCCTTT---GCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || |||||| | |||||||||||| ||||||||| | |||| Sbjct 34080 AAAGCAGGCTATTTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 34138 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 34139 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 34197 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 34198 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 34257 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||| ||||||| ||||||||||||| || Sbjct 34258 CATTTGCCAAAAATGTTTTCTTTAATCA-AGAACGAAAGTTAGAGG 34302 Score = 159 bits (176), Expect = 6e-37 Identities = 209/283 (74%), Gaps = 10/283 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || || |||||||| ||||||||||| | Sbjct 14142 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTCACTTTGAACAAATTAGAGTGCTT 14201 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| || || |||||| | |||||| ||||| ||||||||| | |||| Sbjct 14202 AAAGCAGGCTATTTTCGCCTGAATACTGTGTGCATGGGATAATGGAATAGGACCT-CGGT 14260 Query 156 TCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | | ||| ||||||| ||| || ||||| | Sbjct 14261 TCTATTTTGTTGGTTT-TCGGAAGCCTGAGCTAAAAATTAATAAGGACAGATGGGGGCAT 14319 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| | | ||||||||||||||||||| ||||| || ||||||| Sbjct 14320 TCGTATTGCAACATTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 14379 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 | || |||| |||||||| ||||||| ||||||||||||| Sbjct 14380 CATTTGCCAAAAATGTTTTCTTTAATCA-AGAACGAAAGTTAG 14421 Score = 107 bits (118), Expect = 4e-21 Identities = 107/136 (79%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 4854 ATGCTCTTTACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCT 4795 Query 99 CAAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||| || || ||||| | |||||||||||| ||||||||| | ||| Sbjct 4794 TAAAGCAGGCTATTTTCGCCTGAATASTGTGTGCATGGAATAATGGAATAGGACCT-CGG 4736 Query 155 TTCTATTTTGTTGGTT 170 |||||||||||||||| Sbjct 4735 TTCTATTTTGTTGGTT 4720 >seq689 Length=28852 Score = 176 bits (194), Expect = 8e-42 Identities = 214/286 (75%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| | || ||||||||||| ||||||||||| | Sbjct 28815 TGCTCTTCACTGAGTGTCGAGGTGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 28756 Query 100 AAAGCAGGC---CTTTGCTCGAATAC-ATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| ||||| |||||| | |||||||||||| ||||||||| | ||| Sbjct 28755 GAAGCAGGCTGTTTTTGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-YGGT 28697 Query 156 TCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| ||||| ||| ||||| ||||||||||| || |||| | Sbjct 28696 TCTATTTTGTTGGTTT-TAGGAACCCCGAGGTAATAATTAATAGGGAAAGATAGGGGCAT 28638 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 28637 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 28578 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || |||| |||||||| ||||| | ||||||||||||| || Sbjct 28577 TATTTGCCAAAAATGTTTTCTTTAATTA-AGAACGAAAGTTAGAGG 28533 >seq1719 Length=8586 Score = 136 bits (150), Expect = 7e-30 Identities = 205/286 (72%), Gaps = 10/286 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || ||| | || ||||||||||| |||||| |||| | Sbjct 6053 TGCTCTTCACTGAGTGTCGAGGTRGGCCGGTACGTTTACTTTGAACAAATTAAAGTGCTT 6112 Query 100 AAAGCAGGCCTTT---GCTCGAATACA-TTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| || || | ||||| | ||| |||||||| ||||||||| | |||| Sbjct 6113 GAAGCAGGCTATTTCCGCCTGGATACAGTGTGCAAGGAATAATGGAATAGGACCT-CGGT 6171 Query 156 TCTATTTTGTTGGTTTCTAGGA---CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| ||| |||||||| | |||| | || |||| | Sbjct 6172 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATAATTAGGCACAGATAGGGGCAT 6230 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||| | || | ||||||||||||||||| |||| || || |||| Sbjct 6231 TCGTACTGTGACGTTACAGGTGAAATTCTTGGATCGTCGCGAGACGGACCGAAGCAAAAG 6290 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||| ||||||| ||||| ||||||| || Sbjct 6291 CATTTGCCAAAAATGTTTTCTTTAATCA-AGAACGRAAGTTAGAGG 6335 >seq362 Length=31393 Score = 89.7 bits (98), Expect = 9e-16 Identities = 106/137 (77%), Gaps = 9/137 (7%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC-TTTGCTCG--AATA 121 ||| | || ||||||||||| |||||| ||| || |||||| ||||| | |||| Sbjct 16182 GCCGGTACGTTTACTTTGAACAAATTATGGTGCACATGGCAGGCTATTTGCGCCTAAATA 16123 Query 122 CATTA-GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA--- 177 | | ||| |||||||| ||||||||| | ||||||||||||||||| |||| ||| Sbjct 16122 CTGTGTGCACGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGG-TTCTCGGAACC 16065 Query 178 CCGCCGTAATGATTAAT 194 ||| |||||||||||| Sbjct 16064 CCGAGGTAATGATTAAT 16048 >seq2755 Length=2649 Score = 84.2 bits (92), Expect = 4e-14 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||| || ||||| | ||||| || || |||||||||||| Sbjct 3 GTAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGCGGTGAAATTCTT 62 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||| ||||| || |||||||| || |||| |||||||| ||||||| Sbjct 63 GGATCGTCGCAAGACGGACAGAAGCGAAAGCATTTKCCAAWAATGTTTTCTTTAATCA-A 121 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||||| || Sbjct 122 GAACGAAAGTTAGAGG 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915158605504