Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq429 134 6e-29 seq362 134 6e-29 seq689 129 2e-27 seq2357 113 2e-22 seq575 93.3 2e-16 >seq429 Length=39415 Score = 134 bits (148), Expect = 6e-29 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||||||||| |||| ||| || | | ||||| ||||||| Sbjct 18715 GAGTCGGGTTRCTTGAGAKTGCAGCTCTAAGTGGGTGGTRAACTCCATCTAAGGCTAAAT 18774 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | || ||| ||||||||||||| ||| ||| |||| ||||| | ||||| |||||||| Sbjct 18775 A-TGACCACGAGACCGATAGCGAACACGTACCGTGAGGGAAAGTTAAAAAGAACTTTGGA 18833 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||| || || |||||||| Sbjct 18834 AAGAGAGTTCAAGAGTACGTGAAA 18857 Score = 114 bits (126), Expect = 5e-23 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||| |||||||||||||||||||||||||| ||| |||| ||| Sbjct 19481 AGAGCGTACACGTTGGRACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 19540 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| |||||||||||||| | | ||||| Sbjct 19541 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCTTTGGAACTGGGT 19600 Query 674 ATAGGGG 680 | ||||| Sbjct 19601 AAAGGGG 19607 >seq362 Length=31393 Score = 134 bits (148), Expect = 6e-29 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 11623 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 11564 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | |||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 11563 GRAAACCCTGATGGAGGTYCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 11504 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 11503 ATAGGGGCGA 11494 Score = 134 bits (148), Expect = 6e-29 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 12712 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 12653 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | |||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 12652 GRAAACCCTGATGGAGGTYCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 12593 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 12592 ATAGGGGCGA 12583 Score = 134 bits (148), Expect = 6e-29 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || | |||||||||||||||||||| ||||||||||| ||| |||| ||| Sbjct 29908 AGAGCGTAACCGTTGGGACCCGAAAGATGGTAAACTATGCCTGGTCAGGACGAAGTCAGG 29849 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | |||| ||| |||||| || |||| ||||| ||||||||||||||||| | | ||| Sbjct 29848 GRAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGRAWCTKGGT 29789 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 29788 ATAGGGGCGA 29779 Score = 107 bits (118), Expect = 8e-21 Identities = 102/129 (79%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| ||| ||| Sbjct 13479 GAGTCGRGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTRAAT 13420 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| ||||||||||||| ||||||| |||| | ||| | || || ||||| | Sbjct 13419 AT-GACCACGAGACCGATAGCGAACAAGTACCGTGAGAGGAAGTTCAAGAGAACTTTCAA 13361 Query 159 AAGAGAGTT 167 |||||||| Sbjct 13360 GAGAGAGTT 13352 >seq689 Length=28852 Score = 129 bits (142), Expect = 2e-27 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 17843 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 17784 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| ||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 17783 GGAAACCCTGAKGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 17724 Query 674 ATAGGGGCGA 683 ||||||| || Sbjct 17723 ATAGGGGGGA 17714 >seq2357 Length=3451 Score = 113 bits (124), Expect = 2e-22 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||| ||||| ||| |||| ||| Sbjct 3239 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTCTGCCTAGTCAGGACGAAGTCAGG 3298 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 3299 AAAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 3358 Query 674 ATAGGGGCGA 683 ||||||| || Sbjct 3359 ATAGGGGTGA 3368 >seq575 Length=20992 Score = 93.3 bits (102), Expect = 2e-16 Identities = 109/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA- 98 |||||| | || || || |||||||| | |||| ||||| ||| || || ||| || Sbjct 16763 GAGTCGGGCTGCTTAAGAGTGCAGCTCCGAGTGGGTAGTAAACTTCATCCAAGGCTCAAC 16704 Query 99 --TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||| | ||||||||||||| |||||||| |||| |||| | ||||| |||||| Sbjct 16703 GCTATAACCACGAGACCGATAGCGAACAAGTAGCGTGAGGAAAAGTTAAAAAGTACTTTG 16644 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||| || || |||||||| Sbjct 16643 --AAGAGAGTTCAAGAGTACGTGAAA 16620 Score = 91.5 bits (100), Expect = 6e-16 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||| ||||||| | |||| ||| Sbjct 15988 AGAGCGTACGCGTTGGGACCCGAAAGATGGTGAAACATGCCTGGTCAACACGAAGTCAGG 15929 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| | | |||||| || |||| ||||| || |||| |||||||| | ||| | Sbjct 15928 GGAAACCCCGATGGAGGTCCGTAGCGATTCTGACGGGCAAGTCGATCGTAGGAACTGGAT 15869 Query 674 ATAGGGGC 681 |||||||| Sbjct 15868 ATAGGGGC 15861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079902981650