Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1536 352 5e-95 seq1477 352 5e-95 seq689 352 5e-95 seq1679 347 2e-93 seq429 347 2e-93 seq575 277 3e-72 seq1077 266 6e-69 seq2610 192 1e-46 >seq1536 Length=12692 Score = 352 bits (390), Expect = 5e-95 Identities = 250/283 (88%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 6477 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 6418 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 6417 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 6358 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 6357 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 6298 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 6297 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 6238 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 6237 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 6197 >seq1477 Length=10423 Score = 352 bits (390), Expect = 5e-95 Identities = 250/283 (88%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 3033 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 3092 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 3093 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 3152 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3153 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 3212 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 3213 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 3272 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 3273 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 3313 >seq689 Length=28852 Score = 352 bits (390), Expect = 5e-95 Identities = 250/283 (88%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 2651 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 2710 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 2711 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 2770 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2771 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 2830 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 2831 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 2890 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 2891 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 2931 Score = 295 bits (326), Expect = 1e-77 Identities = 231/273 (85%), Gaps = 5/273 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||| ||| Sbjct 10887 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGCCTC 10946 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||| |||||||||||| |||||| ||||||||||||||| |||||| || Sbjct 10947 ACGACGGTCTAAAGCCAGCTCACGTTTCCTATTGGTGGGTGAACAATCCGACGCTTGGCG 11006 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||| || ||||| ||||||||||||||||| |||||||||||| |||||| || Sbjct 11007 AATTCTGCTCCGCAATGATGGGAAGAGCCGACATCGACGGATCAAAAAGCGACGTCGTTA 11066 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 | |||||| ||| |||||||| |||||||||||||||||||||||||| |||||| || Sbjct 11067 TTAACGCTCGGCCGCCACAAGTCAGTTATCCCTGTGGTAACTTTTCTGAGACCTCTTGCT 11126 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGG 270 ||| ||| | | | |||||||||||||| Sbjct 11127 GAAAACTCTTCAA--GCCAAAAGGATCGATAGG 11157 >seq1679 Length=7362 Score = 347 bits (384), Expect = 2e-93 Identities = 249/284 (88%), Gaps = 5/284 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 2114 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 2055 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 2054 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 1995 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1994 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1935 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| || Sbjct 1934 TGAACGCTTGGCCGCCACAAGYCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 1875 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 ||| || || || |||||||| |||||||| | |||| Sbjct 1874 GAAAACTCTTTAAGCGA--AAAGGATCCATAGGCCATGCGTTCA 1833 >seq429 Length=39415 Score = 347 bits (384), Expect = 2e-93 Identities = 248/283 (88%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | ||||| |||||||||||||||||||||||||||||| Sbjct 25143 TACTGAGCAGGATTACTATCGCAACGACGAGTCATCAGTAGGGTAAAACTAACCTGTCTC 25084 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 25083 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 25024 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 25023 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 24964 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||| || Sbjct 24963 TGAACGCTTGGCCGCYACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 24904 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||| ||||||||||| ||||| Sbjct 24903 GAAAACTCTTCAA--GCCAAAAGRATCGATAGGCCGTGCTTTC 24863 >seq575 Length=20992 Score = 277 bits (306), Expect = 3e-72 Identities = 233/283 (82%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | || || || | ||||| | ||||||| ||||||||||||||| |||| Sbjct 6080 TACTGAGCAGGATCACTATCGCAACGACGAGCCATCAGTGGGGTAAAACTAACCTATCTC 6139 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||| |||| |||||||||||||||||| ||||||||||| |||||||||| || Sbjct 6140 ACGACGGTCCAAACTCAGCTCACGTTCCCTATTGGTGGGTGAACATTCCAACGCTTGGCG 6199 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||| |||||| | || |||| |||||||| ||||| || ||||||||||| ||||||||| Sbjct 6200 AATCCTGCTTTGCTAGGATAAGAAGAGCCCACATCAAAAGATCAAAAAGCGACGTCGCTA 6259 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||| ||| || ||||| |||||||||||||||||| ||||||| ||||||| || Sbjct 6260 TGAACGCTCGGCCGCGACAAGGCAGTTATCCCTGTGGTAATTTTTCTGACACCTCTTGCT 6319 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 6320 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 6360 >seq1077 Length=11932 Score = 266 bits (294), Expect = 6e-69 Identities = 213/251 (85%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 26 GACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT 84 |||| || |||||||| |||||||||| |||||||| |||||| | |||||||||||||| Sbjct 4122 GACGAGTTATCAGTAGAGTAAAACTAATCTGTCTCACGACGGTTTCAACCCAGCTCACGT 4063 Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 || ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4062 TCTCTATTGGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAG 4003 Query 145 AGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG 204 ||||||||||| ||||||||||||| ||| |||||||||||| |||| || ||||| ||| Sbjct 4002 AGCCGACATCGGAGGATCAAAAAGCGACGACGCTATGAACGCCTGGCCGCTACAAGTCAG 3943 Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAAT---TTCGAGGGACTAAAGG 261 ||||||||| |||||| | ||| ||||||| | || ||| ||| | | | ||| | Sbjct 3942 TTATCCCTGCGGTAAC-TGCCTGACACCTCTTG-CTGGAATCTCTTCAA--GCCAAAATG 3887 Query 262 ATCGATAGGCC 272 ||||||||||| Sbjct 3886 ATCGATAGGCC 3876 >seq2610 Length=2958 Score = 192 bits (212), Expect = 1e-46 Identities = 142/165 (86%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5 CGAATTCTGCTTTGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGC 64 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| | Sbjct 65 TATGAACGCTTGGCCGCCACAAGYCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 124 Query 238 CCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||| ||| | | | |||||||||||| ||| ||||| Sbjct 125 CTGAAAACTCTTCAA--GCCAAAAGGATCGATARGCCGTGCTTTC 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854361355488