Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1719 91.5 9e-17 seq429 91.5 9e-17 seq3271 87.8 1e-15 seq2755 86.0 4e-15 seq362 84.2 1e-14 seq2942 75.2 7e-12 >seq1719 Length=8586 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 7071 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 7015 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 7014 GGCAGGGACGTAAT-CAACGCGAGCT 6990 >seq429 Length=39415 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 9954 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 9898 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 9897 GGCAGGGACGTAAT-CAACGCGAGCT 9873 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 15160 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 15104 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 15103 GGCAGGGACGTAAT-CAACGCGAGCT 15079 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 35048 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 34992 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 34991 GGCAGGGACGTAAT-CAACGCGAGCT 34967 >seq3271 Length=1844 Score = 87.8 bits (96), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| ||||| || |||||||| ||||||||| | |||||||||| Sbjct 1644 TCCGAA-GACCTCACTAAATCATTTAAT-CGGTAGTA-GCGACGGGCTGTGTGTACAAAG 1700 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 1701 GGCAGGGACGTAAT-CAACGCGAGCT 1725 >seq2755 Length=2649 Score = 86.0 bits (94), Expect = 4e-15 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| | ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1886 CTCACTRAATYATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 1829 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1828 TAAT-CAACGCGAGCT 1814 >seq362 Length=31393 Score = 84.2 bits (92), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| |||||| |||| |||||||||| Sbjct 15188 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGRGCGGTGTGTACAAAG 15244 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||| ||||||| |||||| |||| Sbjct 15245 GGCAGGAACGTAAT-CAACGCGAGCT 15269 >seq2942 Length=2297 Score = 75.2 bits (82), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||| | |||| || ||||||||| |||||| |||| |||||||||| Sbjct 1961 TCCGAA-GACCTCACTRAATCATT-CAATCGGTAGTA-GCGACGAGCGGTGTGTACAAAG 2017 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||| |||||||| ||||| |||| Sbjct 2018 GGCAGAGACGTAAT-TAACGCGAGCT 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300787245140