Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq429 86.0 7e-15 seq689 77.0 4e-12 seq1719 73.4 5e-11 >seq429 Length=39415 Score = 86.0 bits (94), Expect = 7e-15 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAAT-GTATTCGGGC 68 ||||||||||||||| || | ||||||||| |||||||||||| | |||||| ||| Sbjct 9070 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACACAGTATTCAGGC 9012 Query 69 GTAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | || ||||||||| | ||||||||||| |||| ||||| || Sbjct 9011 GAAAATAGCCTGCTTTAAGCACTCTAATTTGTTCAAAGTAAACGT 8967 Score = 86.0 bits (94), Expect = 7e-15 Identities = 84/105 (80%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAAT-GTATTCGGGC 68 ||||||||||||||| || | ||||||||| |||||||||||| | |||||| ||| Sbjct 34154 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACACAGTATTCAGGC 34096 Query 69 GTAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | || ||||||||| | ||||||||||| |||| ||||| || Sbjct 34095 GAAAATAGCCTGCTTTAAGCACTCTAATTTGTTCAAAGTAAACGT 34051 Score = 82.4 bits (90), Expect = 9e-14 Identities = 82/104 (79%), Gaps = 5/104 (5%) Strand=Plus/Plus Query 11 AACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAAT-GTATTCGGGCG 69 |||||||||||||| || | ||||||||| |||||||||||| | ||||| |||| Sbjct 4720 AACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACACASTATTCAGGCG 4778 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || ||||||||| | ||||||||||| |||| ||||| || Sbjct 4779 AAAATAGCCTGCTTTAAGCACTCTAATTTGTTCAAAGTAAACGT 4822 Score = 77.0 bits (84), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAAT-GTATTCGGGC 68 ||||||||||||||| || | ||||||||| ||||| |||||| | |||||| ||| Sbjct 14276 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATCCCATGCACACAGTATTCAGGC 14218 Query 69 GTAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | || ||||||||| | ||||||||||| |||| || || || Sbjct 14217 GAAAATAGCCTGCTTTAAGCACTCTAATTTGTTCAAAGTGAACGT 14173 >seq689 Length=28852 Score = 77.0 bits (84), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAAT-GTATTCGGGC 68 ||||||||||||||| || | ||||||||| |||||||||||| | |||||| ||| Sbjct 28681 AAACCAACAAAATAGA-ACCRAGGTCCTATTCCATTATTCCATGCACACAGTATTCAGGC 28739 Query 69 GTAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| | ||||||||||| |||| ||||| || Sbjct 28740 AAAAACAGCCTGCTTCAAGCACTCTAATTTGTTCAAAGTAAACGT 28784 >seq1719 Length=8586 Score = 73.4 bits (80), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 5/105 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGC-TAATGTATTCGGGC 68 |||||||||||||| | || | ||||||||| |||||||| ||| | ||||| | ||| Sbjct 6187 AAACCAACAAAATA-GAACCGAGGTCCTATTCCATTATTCCTTGCACACTGTATCCAGGC 6129 Query 69 GTA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | | ||||||||| | |||| |||||| |||| ||||| || Sbjct 6128 GGAAATAGCCTGCTTCAAGCACTTTAATTTGTTCAAAGTAAACGT 6084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595173920382