Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq429 116 4e-24 seq689 109 6e-22 seq1719 89.7 5e-16 >seq429 Length=39415 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | ||||||||| || || |||||| | Sbjct 8967 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATTTTCGCCTGAATACTGTGT 9026 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 9027 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 9084 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 9085 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 9144 Query 184 GAT 186 ||| Sbjct 9145 GAT 9147 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | ||||||||| || || |||||| | Sbjct 34051 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATTTTCGCCTGAATACTGTGT 34110 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 34111 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 34168 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 34169 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 34228 Query 184 GAT 186 ||| Sbjct 34229 GAT 34231 Score = 93.3 bits (102), Expect = 4e-17 Identities = 135/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT---GCTCGAATACATTAC 66 || || |||||||| ||||||||| | | ||||||||| || || |||||| | Sbjct 14173 ACGTTCACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATTTTCGCCTGAATACTGTGT 14232 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-- 123 ||||| ||||| ||||||||| | |||||||||||||| ||||| | ||| ||| | Sbjct 14233 GCATGGGATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAA-GCCTGAG 14289 Query 124 -TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 ||| || |||| ||| || ||||| | ||||| | | | ||||||||||||| Sbjct 14290 CTAAAAATTAATAAGGACAGATGGGGGCATTCGTATTGCAACATTAGAGGTGAAATTCTT 14349 Query 183 GGAT 186 |||| Sbjct 14350 GGAT 14353 Score = 82.4 bits (90), Expect = 8e-14 Identities = 82/104 (79%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | ||||||||| || || ||||| | Sbjct 4822 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATTTTCGCCTGAATASTGTGT 4763 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTT 109 ||||||||||| ||||||||| | |||||||||||||| |||| Sbjct 4762 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTT 4720 >seq689 Length=28852 Score = 109 bits (120), Expect = 6e-22 Identities = 137/183 (75%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | |||||||| ||||| |||||| | Sbjct 28784 ACGTTTACTTTGAACAAATTAGAGTGCTTGAAGCAGGCTGTTTTTGCCTGAATACTGTGT 28725 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | ||||||||||||| ||||| ||||| | || | Sbjct 28724 GCATGGAATAATGGAATAGGACCT-YGGTTCTATTTTGTTGGTTT-TAGGAACCCCGAGG 28667 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 |||| || |||| ||| || |||| | ||||| || | |||||||||||||| Sbjct 28666 TAATAATTAATAGGGAAAGATAGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 28607 Query 184 GAT 186 ||| Sbjct 28606 GAT 28604 >seq1719 Length=8586 Score = 89.7 bits (98), Expect = 5e-16 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT---GCTCGAATACA-TTA 65 || ||||||||||| |||||| || | | |||||||| || || | ||||| | Sbjct 6084 ACGTTTACTTTGAACAAATTAAAGTGCTTGAAGCAGGCTATTTCCGCCTGGATACAGTGT 6143 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 || |||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 6144 GCAAGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 6201 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||||| || | | || |||| | ||| | || | |||||||||||||| Sbjct 6202 TAATGATAATTAGGCACAGATAGGGGCATTCGTACTGTGACGTTACAGGTGAAATTCTTG 6261 Query 184 GAT 186 ||| Sbjct 6262 GAT 6264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511977565920