Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq429 237 3e-60 seq1719 212 1e-52 seq2942 206 5e-51 seq689 197 3e-48 seq362 192 1e-46 seq1536 138 2e-30 seq2660 132 9e-29 seq3271 123 5e-26 seq2755 120 6e-25 >seq429 Length=39415 Score = 237 bits (262), Expect = 3e-60 Identities = 211/258 (82%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 9652 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 9709 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || | || Sbjct 9710 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT-CTTCC 9768 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 9769 C--TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 9826 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 9827 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 9886 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 9887 ACGTCCCTGCCCTTTGTA 9904 Score = 237 bits (262), Expect = 3e-60 Identities = 211/258 (82%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 14858 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 14915 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || | || Sbjct 14916 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT-CTTCC 14974 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 14975 C--TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 15032 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 15033 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 15092 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 15093 ACGTCCCTGCCCTTTGTA 15110 Score = 237 bits (262), Expect = 3e-60 Identities = 211/258 (82%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 34746 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 34803 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || | || Sbjct 34804 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT-CTTCC 34862 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 34863 C--TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 34920 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 34921 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 34980 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 34981 ACGTCCCTGCCCTTTGTA 34998 Score = 138 bits (152), Expect = 2e-30 Identities = 189/258 (73%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| | |||||| |||||| ||| | || | ||||| |||||||| ||||||| Sbjct 2689 CTTCTCAAAGGGACGGACGGCTCCTAGCAGCACGA-GATTGAG-CAATAACATGTCTGTG 2632 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||| ||||||||||||||||||||||||| | || || | | || | Sbjct 2631 GTGCCCTTAGATATTCTGGGCCGCACGCGCGCTACACTAAAGGAATCAGC-ATGTCTT-- 2575 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| || | |||||| | | || ||| |||||| | | | ||| Sbjct 2574 TCCTGGCCGACCGGCCCGGGTAACCCACTGAACCTCCTCCGTGCTAATGCCTGGGGCTTG 2515 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| | | | ||| |||||| || ||||||||| ||||| ||| |||||||||| Sbjct 2514 TAATTATTCCCCGTAAACAAGGAATTCCCAGTAAGCGCAAGTCATGAGCTCGCGTTGATT 2455 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||||||| | ||||| Sbjct 2454 ACGTCCCTGTCTGTTGTA 2437 >seq1719 Length=8586 Score = 212 bits (234), Expect = 1e-52 Identities = 205/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||| | || | ||||| |||||||||||||||| Sbjct 6769 CTTCTTAGAGGGACAGGCGGCTTCTAGCTGCACGA-GATTGAG-CAATAACAGGTCTGTG 6826 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||| ||| | || || || | | || Sbjct 6827 ATGCCCTTAGATGTTCCGGGCCGCACGCGCGCTATACTAAAGGAATCAGCGTAT-CTTCC 6885 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||||| | | || || ||||||| ||||| | | ||| Sbjct 6886 C--TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTSCTTCGTGCTAGGGATTGGGGCTTG 6943 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 6944 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 7003 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 7004 ACGTCCCTGCCCTTTGTA 7021 >seq2942 Length=2297 Score = 206 bits (228), Expect = 5e-51 Identities = 203/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| ||| ||||| |||||||||||||||| Sbjct 2263 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCAC-AAGATTGAG-CAATAACAGGTCTGTG 2206 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||| ||||| || |||||| || || || || | || Sbjct 2205 ATGCCCTTAGATGTTCTGGGCCGCRCGCGCRCTRCACTGAAGGAATCAGCGTGT-CTTCC 2147 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||||| | | || ||| ||||| ||||| | | | | Sbjct 2146 C--TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTATGTGCTAGGGATTGGGGCTCG 2089 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| ||| | |||||||||| || |||| ||||| ||||| ||| |||||| ||| Sbjct 2088 CAATTATTCCTCATAAACGAGGAATTCCCAGTAGGCGCGAGTCATAAGCTCGCGTTAATT 2029 Query 311 ACGTCCCTGCCCTTTGTA 328 ||||| |||||||||||| Sbjct 2028 ACGTCTCTGCCCTTTGTA 2011 >seq689 Length=28852 Score = 197 bits (218), Expect = 3e-48 Identities = 201/256 (79%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||| |||||||| ||||| | || || || | |||| |||||||||||||| ||| Sbjct 19730 TCTCAGAGGGACAGGCGGCTTCTAGTCGCACGA-GATTGAA-CAATAACAGGTCTGCGAT 19673 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 ||||||||||||||| |||||||||||||||||||||| || || || || | || | Sbjct 19672 GCCCTTAGATGTTCTTGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT-CTTCCC- 19615 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 |||||| |||| | | |||| | | || || ||||||| ||||| | | ||||| Sbjct 19614 -TGGCCGAAAGGCCCGTGTAACCCGCTGAACCTTCTTCGTGCTAGGGATTGGGGCTTGCA 19556 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | |||||||||| || |||||||||| ||||| ||| |||||||||||| Sbjct 19555 ATTATTTCGCACGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTAC 19496 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 19495 GTCCCTGCCCTTTGTA 19480 >seq362 Length=31393 Score = 192 bits (212), Expect = 1e-46 Identities = 201/258 (78%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||| ||||| || ||||| | ||||| || | ||| ||||||||||||||||| Sbjct 15490 CTTCTCAGAGGAACCGCCGGCTTCTAGCCGCACGA-GATTG-GGCAATAACAGGTCTGTC 15433 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||| |||||||||||||||||||||||||||||||| || || || || | || Sbjct 15432 ATGCCCTCAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGT-CTTCC 15374 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | |||||| |||| | |||| | | | || || ||||||| ||||| | | || Sbjct 15373 C--TGGCCGAAAGGCCCGGGTTACCCGCTGAACCTTCTTCGTGCTAGGGATTGGGGCCTG 15316 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||||| || | |||||||||| | | |||||||| |||| ||| |||||||||| Sbjct 15315 CAATTATTGTTCCTGAACGAGGAATTTCCAATAAGCGCGAGTCAAGAGCTCGCGTTGATT 15256 Query 311 ACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||| Sbjct 15255 ACGTTCCTGCCCTTTGTA 15238 >seq1536 Length=12692 Score = 138 bits (152), Expect = 2e-30 Identities = 161/215 (75%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||| | Sbjct 12100 GCAATAACAGATCTGTGATGCCCTCAGATGTTCTGGGACGCACGCGCACTACACTGAAGG 12159 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || | | || |||| |||| | |||| | |||||| | | || ||| | || Sbjct 12160 AATCAGC-ATGTCTTCAC--TGGCTGAAAGGCCCGGGTAACCCGCTGAACCTCCTCCATG 12216 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | |||||| ||| | | ||| |||||| || |||||||||| || Sbjct 12217 CTAGGGATTCGGGCCTGCAATGATTTCCCAGGAACAAGGAATTCCCAGTAAGCGCGAGTA 12276 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | | |||| |||| |||||||||||||||| Sbjct 12277 AGTAACTCACGTTCATTAGGTCCCTGCCCTTTGTA 12311 >seq2660 Length=2805 Score = 132 bits (146), Expect = 9e-29 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||| ||||||||||||| |||||||||||| ||||||||| |||||| || | Sbjct 1610 GCAATAACAGATCTGTGATGCCCTCAGATGTTCTGGGACGCACGCGCACTACACKGAAGG 1669 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | || | | || || ||| | | |||| ||| |||| | || || ||| |||| Sbjct 1670 AATCAGC-ATGTCTTC-CCT--GGCTGAAGTCCTGAGTAACCCGGTGAACCTCCTTCGTT 1725 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | ||||| | ||| | | ||| |||||| || ||| |||||| ||| Sbjct 1726 CTAGGGATTCGGGCTTGCAGTGATTTCCCAGAAACAAGGAATTCCCAGTGAGCGCGAGTC 1785 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | | | |||| |||| |||||||||||||||| Sbjct 1786 AGTAACTCACGTTCATTAGGTCCCTGCCCTTTGTA 1820 >seq3271 Length=1844 Score = 123 bits (136), Expect = 5e-26 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| || | || ||| |||||| ||||| | | ||| Sbjct 1831 CCCTGGCCGAAAGGCCCGGGTAACCTGCTGAACCTCCTCCGTGCTAGGGATTGGGGCTTG 1772 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| ||| | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1771 CAATCATTCTCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 1712 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 1711 ACGTCCCTGCCCTTTGTA 1694 >seq2755 Length=2649 Score = 120 bits (132), Expect = 6e-25 Identities = 132/171 (77%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 || ||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 571 CTCCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 628 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||||||| ||| |||||||||| || || || | || | Sbjct 629 ATGCCCTTAGATGTTCTGGGCCGCAYGCGYGCTACACTGAAGGAATCAGCGTG-TCTT-- 685 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGAT 241 || |||||| |||| | |||||| | | || || ||||||| |||| Sbjct 686 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTTCTTCGTGCTACGGAT 736 Score = 93.3 bits (102), Expect = 8e-17 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| || | | | ||| | |||| || |||||||||| ||||| ||| ||||||| Sbjct 1765 TTGCAATTGTTCCCCATGAACAAAGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTG 1824 Query 308 ATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||| Sbjct 1825 ATTACGTCCCTGCCCTTTGTA 1845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947157158144