Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4498 116 3e-21
seq3919 84.2 2e-11
>seq4498
Length=49303
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052
|||||| || || |||| ||||| || || || ||||| | || ||||| | |
Sbjct 41928 ACAAACATGTTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAA 41987
Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
|| || | |||||| ||||| ||||||||||| || ||||||| |||||||||||
Sbjct 41988 TATTCTATAATTTCAGTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTT 42047
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
||||||||||| ||| ||||||| |||||| || ||||| || ||||| || ||
Sbjct 42048 GATTTGCGATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTGAGAG 42107
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGC 66201
| ||||| || ||| ||| | || ||
Sbjct 42108 TTCATGATAGCTAACCACAGATCCCGGGC 42136
>seq3919
Length=163912
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539
|| ||||| ||| | | || ||||| | ||||| || | || ||||||||| ||
Sbjct 142351 TTCGGTGAGCGAGTCGTTGCCTTTGCAGCAGTCGAAGGGATCTTCTTCAGTGGAAGTTTC 142292
Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599
||| | || || ||| | || || |||||| | ||||| ||||||||||||||||| |||
Sbjct 142291 GCCTCCATATTCTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTGACCTTCAGCAACGAG 142232
Query 61600 TTGATATCACGCGACGAGG 61618
| || || | |||||||
Sbjct 142231 CTCATTTCCAGGGACGAGG 142213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397546084436720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |