Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4498 116 3e-21 seq3919 84.2 2e-11 >seq4498 Length=49303 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||| || || |||| ||||| || || || ||||| | || ||||| | | Sbjct 41928 ACAAACATGTTAACAGCAATCGATGCTAGATTACAAACAGCAACTTCTTCAGGGCTTGAA 41987 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || || | |||||| ||||| ||||||||||| || ||||||| ||||||||||| Sbjct 41988 TATTCTATAATTTCAGTGCAAAGATTACTGCATTTGATTGTGCCCACGTTCTGTTGATTT 42047 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||||||||| ||| ||||||| |||||| || ||||| || ||||| || || Sbjct 42048 GATTTGCGATTGCAGTGATCTTTGTACAGCATGTATGGTGTGCCAGTTTCAACCTGAGAG 42107 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGC 66201 | ||||| || ||| ||| | || || Sbjct 42108 TTCATGATAGCTAACCACAGATCCCGGGC 42136 >seq3919 Length=163912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || ||||| ||| | | || ||||| | ||||| || | || ||||||||| || Sbjct 142351 TTCGGTGAGCGAGTCGTTGCCTTTGCAGCAGTCGAAGGGATCTTCTTCAGTGGAAGTTTC 142292 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| | || || ||| | || || |||||| | ||||| ||||||||||||||||| ||| Sbjct 142291 GCCTCCATATTCTGGCTCAAAAAGCGTGGATTGATGCCAGGTCTGACCTTCAGCAACGAG 142232 Query 61600 TTGATATCACGCGACGAGG 61618 | || || | ||||||| Sbjct 142231 CTCATTTCCAGGGACGAGG 142213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397546084436720