Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4656 168 6e-40 seq90407 102 8e-20 seq71469 96.9 3e-18 seq4984 96.9 3e-18 seq176208 89.7 5e-16 seq44255 89.7 5e-16 seq16024 86.0 6e-15 >seq4656 Length=104629 Score = 168 bits (186), Expect = 6e-40 Identities = 145/180 (81%), Gaps = 7/180 (4%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| ||||| |||||||||| ||||||| ||||||||||||||||||||| ||| Sbjct 93436 GGCACACGGGGGATGTCTAGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAG 93377 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||||| |||| || ||||| ||||||| ||| |||||||||||||||||| || Sbjct 93376 CCACGGGGATCGGCAAATGCGAATCGATCCGTGGATCTCCGAATGGGGCAACCCGGCATG 93317 Query 121 TTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| ||| || ||| | | | ||||||| | ||||||||||||||||||| Sbjct 93316 TTGAAGACATGCCATCA-------AATGAAGCGAACGCGCCGAACTGAAACATCTAAGTA 93264 >seq90407 Length=3072 Score = 102 bits (112), Expect = 8e-20 Identities = 94/115 (82%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| ||||||||| |||||| |||| Sbjct 396 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGATAGCCTGCGATAAGC 455 Query 62 TACGGGGA-TTGGCACATACGAAT-TGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | |||| ||| || | ||||||| |||| || |||||||| ||||| Sbjct 456 TTCGGGGAGTCGGCAAATA-GACTGTGATCCGGAGATCTCTGAATGGGGGAACCC 509 >seq71469 Length=5065 Score = 96.9 bits (106), Expect = 3e-18 Identities = 136/185 (74%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| ||||||| | |||||||||||| |||| Sbjct 4627 GGTGGATGCCTTGGCAGTCAGAGGCGACGAAAGACGTGACAGCCTGCGAAAAGCTCCGGG 4568 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATAT-ATTGG 124 || |||| ||| |||||||| |||| || |||||||| ||||| ||| || | Sbjct 4567 GAGGCGGCAAATATCCTTTGATCCGGAGATGTCTGAATGGGGGAACCCACTTATCATAAG 4508 Query 125 AGATATATCATA-AC------GCTAG--GCGTTAGGCGAACGTGGGGAACTGAAACATCT 175 | | ||| | | || ||| | || ||||||||| |||||| |||||||||| Sbjct 4507 ATAGGTATTACACACTGAATACATAGGTGTGTAAGGCGAACGAGGGGAAGTGAAACATCT 4448 Query 176 AAGTA 180 |||| Sbjct 4447 CAGTA 4443 >seq4984 Length=100180 Score = 96.9 bits (106), Expect = 3e-18 Identities = 133/179 (74%), Gaps = 14/179 (8%) Strand=Plus/Minus Query 10 TGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGGGA 69 ||||||||| ||| | ||||||| |||||||||| | ||||||| ||||| ||||| Sbjct 69944 TGGATGCCTTGGCGTTAAGAGGCGATGAAGGACGTGGCAGGCTGCGATAAGCTGTGGGGA 69885 Query 70 -TTGGCACATACGAATT--GATCCGTAGATATCCGAATGGGGCAACCCGA-TATATTGG- 124 ||| || || |||| |||||| |||| ||||||||||| ||||| | || || | Sbjct 69884 ATTGTCA---ACAAATTTTGATCCGCAGATTTCCGAATGGGGAAACCCAACTAGCTTAGC 69828 Query 125 -AGATATATCATAACGCTAGG--CGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| |||| ||| | || | || ||| ||| ||||||||| ||||||||| Sbjct 69827 TAGTTATTACATA---CTAAGTATGTAAAGCAAACTTGGTGAACTGAAATATCTAAGTA 69772 >seq176208 Length=855 Score = 89.7 bits (98), Expect = 5e-16 Identities = 78/96 (81%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| || |||||| |||||||||| || ||||||||||| Sbjct 96 GCACATGGTGGATGCCTTGGCAGTCATAGGCGATGAAGGACGTGGTAGCCTGCGAAAAGC 37 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGAT 96 |||||||| ||||| | | | ||||||||||||| Sbjct 36 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGAT 1 >seq44255 Length=9396 Score = 89.7 bits (98), Expect = 5e-16 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 |||| |||||| ||| | |||||| ||||||||||||| ||||||| |||| | ||| Sbjct 7837 GGTGAATGCCTTGGCATGCACAGGCGATGAAGGACGTGATACGCTGCGATAAGCCATGGG 7778 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || ||| | ||||||||| ||| ||||||||||| ||||| Sbjct 7777 GAGCTGCGAATAGGCTTTGATCCGTGGATTTCCGAATGGGGAAACCC 7731 >seq16024 Length=37459 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 22269 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 22328 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 22329 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 22381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475967489916