Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq5165 331 2e-88 seq48204 232 1e-58 seq1223 183 6e-44 seq140972 141 2e-31 seq89015 136 8e-30 >seq5165 Length=98167 Score = 331 bits (366), Expect = 2e-88 Identities = 276/335 (82%), Gaps = 16/335 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| || ||||||| ||||||||||||||||||||| Sbjct 34478 CTTTACAACCCGAAGGCCTTCTT-CACTCATGCGGCAT-GGCTGGATCAGGCTTTCGCCC 34421 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 34420 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAG 34361 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||| ||| || |||| | | |||||| |||| |||||||| Sbjct 34360 TGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGTCTTGGTAAGCCTTTACCTCA 34301 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||| |||||| | ||||||||||| ||| |||| || | || Sbjct 34300 CCAACTAACTAATCTAATATAGGCTCATCTAATA--GCAA-----TAAATT-------TT 34255 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| ||||| ||||||||| |||||||| | |||| || ||||| || Sbjct 34254 TCCCCCGTAGGGCGTATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAG 34195 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||||| ||||||||||||||| ||| || Sbjct 34194 GTAGATTCCTATACATTACTCACCCGTCTGCCACT 34160 >seq48204 Length=5524 Score = 232 bits (256), Expect = 1e-58 Identities = 277/360 (77%), Gaps = 17/360 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 5098 TTTACAACCCGAAGGCCGTCGTCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 5155 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 5156 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 5215 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||||||||||||||||||||||||||| Sbjct 5216 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 5275 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCC---CGAAGGTCCCCTGC 238 |||| |||| || | | ||||||| | || ||| | | || || ||| Sbjct 5276 CAACAAGCTGATAGGCCGCGAGCTCATCCCTGACCG-AAGTTCTTTCCAA---CCGATGC 5331 Query 239 TTTCTCCCG-TAGG-ACGTATGCGGTATTAG-CGTCCGTTTCCGAACG-TTATCCCCCAC 294 || | | || ||||| ||||||||| ||| ||||||| |||| ||||||| | Sbjct 5332 AGATGCCTGCTCGGCTCGTATCCGGTATTAGACGT-CGTTTCC-AACGCTTATCCCAGAG 5389 Query 295 TACCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT-CTCAAGAGAAGCAAGCT 352 | |||||||| || | | |||||||||||| |||| || || |||| |||||||| Sbjct 5390 TCAGGGGCAGATTGCTCACGTGTTACTCACCCGTTCGCCACTAATCCAGAGGAGCAAGCT 5449 >seq1223 Length=197574 Score = 183 bits (202), Expect = 6e-44 Identities = 153/186 (82%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| ||| || |||||| |||||||||| |||||||||||| Sbjct 263 CACGCGGCAT-GGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTCACTGCTGCCTC 205 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||| |||||||| | | Sbjct 204 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCT 145 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || ||| ||| |||||| |||| |||||| |||||||| ||||| ||| | |||||| Sbjct 144 ACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCAT 85 Query 209 CTGATA 214 || ||| Sbjct 84 CTTATA 79 >seq140972 Length=1238 Score = 141 bits (156), Expect = 2e-31 Identities = 138/177 (78%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 101 |||||||| ||||||||||||||||||||||||| |||||||| | | ||| ||| Sbjct 846 CTGGATCAAGCTTTCGCCCATTGTCCAATATTCCTCACTGCTG------GCAAGAGCCTG 899 Query 102 GACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCC 161 | || | ||||||| |||||||| |||||||| |||||| | || || ||||| ||| | Sbjct 900 GGCCTTATCTCAGTCCCAGTGTGGCTGATCATTCTCTCAAATCAACTAAGGATCATCGGC 959 Query 162 TTGGTGAGCCATTACCTCACCAACTAGC-TAATCCGACCTAGGCTCATCTGATAGCG 217 ||| | ||| |||||| ||||||| | |||||| | | |||||||| ||| || Sbjct 960 TTGTTAAGCTTTTACCTTTCCAACTACCTTAATCCTATACAAGCTCATCTTATAACG 1016 >seq89015 Length=3127 Score = 136 bits (150), Expect = 8e-30 Identities = 107/124 (86%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGA-AGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || | || || |||| | |||||||||| |||||| ||||||| |||||| Sbjct 3001 TTTACAACCCAATAGGCCGTCTTCCTG-CACGCGGCAT-GGCTGGGTCAGGCTCTCGCCC 3058 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||| Sbjct 3059 ATTGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAG 3118 Query 121 TGTG 124 |||| Sbjct 3119 TGTG 3122 Score = 100 bits (110), Expect = 6e-19 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGG 152 |||||||||| |||| ||||||| |||||||| || | |||||||||| | ||| | Sbjct 1 AGGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTACTG 60 Query 153 ATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGA 212 ||||||||||||||| || |||| | ||||| |||||||| ||| | || |||| | Sbjct 61 ATCGTCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTAATCAGACGCATGCCCATCCCA 120 Query 213 TAGCG 217 || || Sbjct 121 TACCG 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070067870080