Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01001416.1 Length=341 Score E Sequences producing significant alignments: (Bits) Value seq4 143 5e-32 seq5 78.8 2e-12 >seq4 Length=924746 Score = 143 bits (158), Expect = 5e-32 Identities = 217/302 (72%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 4 CTTGAGCTTGCTCGCCACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGT 63 ||| |||||| | | | |||| || | ||||||||| ||| | |||||||||||| Sbjct 407482 CTTCAGCTTGTTGCCGAAGGGCAGGAAGAACAGGTTGGCCGAGGCGATGCCGTAGATGGT 407423 Query 64 GGCGACAAACGCCACGGCAATGCCGCTGCCCAG-TTGCGAAGGGTCGGCGAGGTTGCCCA 122 ||| ||| || |||| |||||| ||| || |||| || |||||||| ||||||| Sbjct 407422 CGCGGTAAAAGCGGCGGCGATGCCGGGGCCGAGCTTGCTG-GGATCGGCGAGATTGCCCA 407364 Query 123 TCACGTGGATCAGGCCCATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCA 182 | || |||||||| | ||| || |||| |||||| | |||||||||||| ||||| Sbjct 407363 TGACCGCCATCAGGCCGAGCACGGCGCCGACGATGCCCAGCGTCGGCGCGTAGATGCCCA 407304 Query 183 TGCTTTCAAAGACTTTGGCGGCGTTGATATCGCGGCTTTCCTGGGTGG--TAGAAATCCA 240 || || || || |||||||| | | ||| | |||| || || | || || | Sbjct 407303 TGGCCTCGAACACCTTGGCGGCCGCGGTGTCGTG---CTCCTCGGCGGTCTCGACCTCGA 407247 Query 241 CTTCCCGAAGTCTGCGAATCGCT-TCCGGCTCGGCGCCGTCCACCAGCAGTTGCAGGCCT 299 ||| | | |||| || ||| ||||||||| ||||||| |||||||| |||||||| Sbjct 407246 TCTCCAGCACATTGCGGAT-GCTCTCCGGCTCGCCGCCGTCGACCAGCAGCTGCAGGCCC 407188 Query 300 TT 301 || Sbjct 407187 TT 407186 >seq5 Length=869209 Score = 78.8 bits (86), Expect = 2e-12 Identities = 121/173 (70%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 20 ACCGGCAACAACACCAGGTTGGCACTGGCCACGCCGTAGATGGTGGCGACAAACGCCACG 79 ||||| | || | |||||| ||| | ||||||| ||||| ||||||||||| ||| Sbjct 177716 ACCGGGATAAATATCAGGTTAGCAAAGCCCACGCCATAGATAGTGGCGACAAAAGCCGTA 177657 Query 80 GCAATGCCGCTGCCCAGTTGCGAAGGGTCGGCGAGGTTGCCCATCACGTGGATCAGGCCC 139 ||||| ||| || || | || || | || ||||| | ||||| | ||| Sbjct 177656 GCAATACCGGCACCAAGCAAAGTCGGCTCATTAATATTCGCCATCGCCTGGATTAAACCC 177597 Query 140 ATCACCGCACCGATGATGCCGATGGTCGGCGCGTAGCCGCCCATGCTTTCAAA 192 | |||||||||||| || |||||||| || || |||||||| |||||| Sbjct 177596 AACACCGCACCGATAATACCGATGGTTGGGCTATACCCGCCCATAGCTTCAAA 177544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 987017826432