Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4656 311 1e-82 seq4984 279 8e-73 seq21163 224 2e-56 seq156376 181 2e-43 seq111198 77.0 5e-12 >seq4656 Length=104629 Score = 311 bits (344), Expect = 1e-82 Identities = 228/265 (86%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||||||| |||||| |||||| | || || ||||| ||| || | ||| Sbjct 93820 TTCGCACTTAGATGCTTTCAGCGCTTATCTATCCCGGACGTAGCTACCCTGCCGTACACC 93879 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| | | ||| ||| |||||| ||| ||||| ||||||||||||||||||||| ||| Sbjct 93880 TGGCGGCATAACAGGTTCACCAGCGGTCCGTCCAACCCGGTCCTCTCGTACTAAGGTCAG 93939 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 ||| |||||| |||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 93940 ATCCACTCAAACTTCCAGCGCCCACAACAGATAGGGACCGAACTGTCTCGCGACGTTCTG 93999 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 94000 AACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCCAGC 94059 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||||||| ||||||||||||||| Sbjct 94060 CCCAGGATGTGACGAGCCGACATCG 94084 >seq4984 Length=100180 Score = 279 bits (308), Expect = 8e-73 Identities = 226/274 (82%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 || ||||| ||| ||||| |||| |||||| ||||||| || | || ||||| ||||| Sbjct 67315 GAAGAGGGTTTCTTGCTTATATGCTTTCAGCAATTATCCCATCTATACATAGCTACCCAG 67374 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||||| ||| ||||| |||||||||| | |||||| |||||||||||||| Sbjct 67375 CGATGCTATTGGCATAACAGCTGGTACACCAGAGGTATATCCATCTCGGTCCTCTCGTAC 67434 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| | ||||||||||||| | |||||| | ||||| ||||||||||||| | Sbjct 67435 TAGAGTCAGACCTTCTCAAATTTCCTTCACCCACGGCAGATAGAAACCGAACTGTCTCAC 67494 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||| ||| ||| | ||||||| ||||||||||| ||||||||||||| Sbjct 67495 GACGTTCTAAACCCAACTCACGTATCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 67554 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | |||||||||||||||| || ||| |||||||| Sbjct 67555 TTCTTCAGCCCCAGGATGTGATGAGTCGACATCG 67588 >seq21163 Length=23524 Score = 224 bits (248), Expect = 2e-56 Identities = 180/217 (83%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 |||| |||| ||||| ||||| ||||||||| ||||| | |||| ||||| |||| | Sbjct 9801 CTTATATGCTTTCAGTGTTTATCTCTTCCAAACATAGCTACTCAGCGGTGCACCTGGCGG 9742 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||||||| | |||||||||||||| || |||||||||||||||| || |||| Sbjct 9741 TACAACTGATACACCAGAGGTTTGTTCAATTCGGTCCTCTCGTACTAGAATCAAGCCCTC 9682 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 ||||| || |||||| | | ||||| |||||||||||||| |||||||||||||||| Sbjct 9681 TCAAACATCTAACGCCCGCAATAGATAGAGACCGAACTGTCTCACGACGTTCTGAACCCA 9622 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 ||||||||||| ||||||||||||||||||||||||| Sbjct 9621 GCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCC 9585 >seq156376 Length=1124 Score = 181 bits (200), Expect = 2e-43 Identities = 151/185 (82%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| | |||||| ||| || |||| |||| Sbjct 185 GCTTAGATGCTTTCAGCGTTTATCTCTTCCGTATTTAGCTACCCGGCAATGCCACTGGCG 126 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| |||||||| | |||||| ||||||||||||||||| | ||||| || Sbjct 125 TGACAACCGGTACACCAGAGATACGTCCATTCCGGTCCTCTCGTACTAGGAACAGCCCCC 66 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||||||||| ||||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 65 TTCAAATTTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 6 Query 196 AGCTC 200 ||||| Sbjct 5 AGCTC 1 >seq111198 Length=1666 Score = 77.0 bits (84), Expect = 5e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| |||| || ||||| ||| || Sbjct 95 AGGTGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCATACATAGCTACCCTGC 36 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGT 97 ||| |||| ||||| ||| |||||||||| Sbjct 35 ACTGCGGCTGGCGCCACAACAGGTCCACCAGAGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779436694896