Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq5165 320 4e-85 seq48204 257 4e-66 seq1223 156 1e-35 seq89015 150 4e-34 seq140972 116 9e-24 >seq5165 Length=98167 Score = 320 bits (354), Expect = 4e-85 Identities = 320/412 (78%), Gaps = 16/412 (4%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| || |||||||||||| ||||||||| ||||||| Sbjct 34478 CTTTACAACCCGAAGGCCTTCTTCACTCATGCGGCATGGCTGGATCAGGCTTTCGCCCAT 34419 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 34418 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCAGTTCCAGTG 34359 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| ||||||||||||| |||||| |||| | | || ||| ||| ||||| | || Sbjct 34358 TGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGTCTTGGTAAGCCTTTACCTCACC 34299 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||| |||||| || | || ||||| |||| | | || | ||| | | | Sbjct 34298 AACTAACTAATCTAATATAGGCTCATCTAATAGCAATA------AATTTTTCCCCCGTAG 34245 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 | ||| ||| ||||||||| ||||||||| |||| || | | ||| Sbjct 34244 G----GCG----TATACGGTATTAGTTGCCGTTTCCAACAATTATTCCGTACTACTAGGT 34193 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAGCAAGCTGCTTCC 362 || |||| | |||||||||||||||| |||||| || | | |||||||| Sbjct 34192 AGATTCCTATACATTACTCACCCGTCTGCCACTAAGTTATACCA-TAGCAAGCTAAAATA 34134 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 34133 TAACTCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCATTCTGAG 34082 >seq48204 Length=5524 Score = 257 bits (284), Expect = 4e-66 Identities = 315/423 (74%), Gaps = 28/423 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 5098 TTTACAACCCGAAGGCCGTCGTCCCTCACGCGGCGTTGCTGCATCAGGCTTGCGCCCATT 5157 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 5158 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 5217 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| ||||| |||||||| || |||| ||||||||| |||| ||||||||| | ||| Sbjct 5218 GGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCA 5277 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTC---CCCCTCTT 241 || |||| || | | |||||| ||| |||||| || || | Sbjct 5278 ACAAGCTGATAGGCCGCGAGCTCATCC----CTGA-----CCGAAGTTCTTTCCAACCGA 5328 Query 242 TG-----GTCT--TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCT 294 || | || | | ||| ||||||||| | |||||||| | |||| ||| Sbjct 5329 TGCAGATGCCTGCTCGGCTCGTATCCGGTATTAGACGTCGTTTCCAACGCTTAT--CCCA 5386 Query 295 CCATCA--GGCAG-TTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGC 351 ||| ||||| || | || |||||||||||| ||||||| || | || ||| Sbjct 5387 GAGTCAGGGGCAGATTGCTCACGTGTTACTCACCCGTTCGCCACTAATC--CAGAGGAGC 5444 Query 352 AAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCT 411 ||||| | || | | |||||||||||||||||||| || ||||||||||||| || Sbjct 5445 AAGCTCC--CCCTTCATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCT 5502 Query 412 GAG 414 ||| Sbjct 5503 GAG 5505 >seq1223 Length=197574 Score = 156 bits (172), Expect = 1e-35 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||| || | ||||||||||||||| |||| ||| || |||||| ||||||||| ||| Sbjct 273 CTTCATCCTGCACGCGGCATGGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTCAC 214 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||||||||||||||||||| |||||||||||| ||||||||| | || |||||| Sbjct 213 TGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTC 154 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 || | ||| ||| ||| || ||| ||| ||||| ||||||| ||||| Sbjct 153 AGGACCCCTACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAAT 100 >seq89015 Length=3127 Score = 150 bits (166), Expect = 4e-34 Identities = 108/123 (88%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGA-AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| | ||||| ||||| | ||||||||||||||| ||||||| ||||||| Sbjct 3001 TTTACAACCCAATAGGCCGTCTTCCTGCACGCGGCATGGCTGGGTCAGGCTCTCGCCCAT 3060 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||| Sbjct 3061 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGCCCGTATCTCAGTGCCAGTG 3120 Query 124 TGG 126 ||| Sbjct 3121 TGG 3123 Score = 104 bits (114), Expect = 6e-20 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 94 AGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGG 153 |||||||||| |||| ||||||| ||||||||| | | |||||||||| | ||| | Sbjct 1 AGGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTACTG 60 Query 154 ATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||||| ||||| || |||| |||||||| |||||||| Sbjct 61 ATCGTCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTAATC 102 >seq140972 Length=1238 Score = 116 bits (128), Expect = 9e-24 Identities = 133/178 (75%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 || |||| ||||| || ||| |||| |||| |||||||||| ||||||||| ||||| Sbjct 826 TCCTCATTCACGCAATATTACTGGATCAAGCTTTCGCCCATTGTCCAATATTCCTCACTG 885 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||| | | ||| |||| || | ||||||| |||||||||||| |||| |||||| Sbjct 886 CTGGC------AAGAGCCTGGGCCTTATCTCAGTCCCAGTGTGGCTGATCATTCTCTCAA 939 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC-TAATCCCAT 199 | || ||| ||||| ||| || | | || ||||| ||||||| | |||||| || Sbjct 940 ATCAACTAAGGATCATCGGCTTGTTAAGCTTTTACCTTTCCAACTACCTTAATCCTAT 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220196795136