Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq50242 235 1e-59 seq1079 122 2e-25 seq8133 93.3 8e-17 seq47552 80.6 5e-13 >seq50242 Length=7886 Score = 235 bits (260), Expect = 1e-59 Identities = 132/133 (99%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 112 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 172 Query 140 GATGTTCTGGGCC 152 ||||||||||||| Sbjct 173 GATGTTCTGGGCC 185 >seq1079 Length=207171 Score = 122 bits (134), Expect = 2e-25 Identities = 159/215 (74%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC---C 177 ||||||||||||||||| |||||| | |||||||||| |||||||| | ||||| | Sbjct 182881 CAGGTCTGTGATGCCCTAAGATGTCCGGGGCCGCACGTGCGCTACAGT---AGAGCGGAC 182937 Query 178 AACGAG-TTCATCA--CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTG 233 |||| | ||| | |||||||| | || || ||||| | | || | || ||| Sbjct 182938 AACGTGCTTCTTTGTTCCTTGGCCTGTCGGCCTAGGTAACCAGAGCAGTCTGTCTCAGTG 182997 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||| | |||| |||| || | || ||||||||||| ||||||| ||||| ||| Sbjct 182998 CTGGGGACCTGGGATTGTAATTGTTCCCCTCCAACGAGGAATTCCTAGTAGGCGCGAGTC 183057 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | | || | || || ||| |||||||||||| Sbjct 183058 ATTAACTCGTGCCGACTAAGTCACTGCCCTTTGTA 183092 >seq8133 Length=71924 Score = 93.3 bits (102), Expect = 8e-17 Identities = 185/266 (70%), Gaps = 15/266 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA--AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||| |||| |||||| | ||||| ||| ||| | | ||||||||| Sbjct 20419 CTTCTTAGAAGGACCGTCGGCTTAGAAGCCGTACGAAAAG-GAGCGACTG-CAGGTCTGT 20362 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC---CAACGAGTTC 186 |||||||| ||||| ||||| |||| | |||||| | ||||| ||||| | | Sbjct 20361 GATGCCCTAAGATGCCTGGGGCCACACGTGTGCTACAGT---AGAGCGGACAACGTGCTT 20305 Query 187 ATCA---CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATA 242 || |||||||| | || || ||||| | | | || || |||||||||| | Sbjct 20304 ATTTGTTCCTTGGCCTGTTGGCCTCGGTAACCGATGCAGTCCCTCTCAGTGCTGGGGACA 20245 Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 | | |||| |||| || | || ||||||||||| |||||||| | || || | | || Sbjct 20244 GGGGATTGTAATTGTTCCCCTCCAACGAGGAATTCCTAGTAA-AAAGAGTTATTAACTCG 20186 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 | || || ||| |||||||||||| Sbjct 20185 TGACGACTAAGTCACTGCCCTTTGTA 20160 >seq47552 Length=8852 Score = 80.6 bits (88), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 9/167 (5%) Strand=Plus/Minus Query 121 CAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC---C 177 |||||||||||||||| |||||| | || ||||||| |||||||| | ||||| | Sbjct 8831 CAGGTCTGTGATGCCCCAAGATGTCCGGGACCGCACGTGCGCTACAGT---AGAGCGGAC 8775 Query 178 AACGAGTT--CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGC 234 |||| | | | ||||||||| | || || ||||| | | | | || |||| Sbjct 8774 AACGTGCTGAAAGTACCTTGGCCTGTCGGCCTCGGTAACCAGAGCAGTCCTTCTCAGTGC 8715 Query 235 TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAG 281 | ||||| | | |||| |||| || | || ||||||||||| ||||| Sbjct 8714 TAGGGATCGGGGATTGTAATTGTTCCCCTCCAACGAGGAATTCCTAG 8668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945492804608