Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20]
180,236 sequences; 2,439,301,466 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq1223 311 2e-82
seq89015 190 4e-46
seq5165 168 1e-39
seq48204 161 2e-37
>seq1223
Length=197574
Score = 311 bits (344), Expect = 2e-82
Identities = 290/362 (80%), Gaps = 10/362 (3%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA---AGCTCCCACA 57
||||||||||||||||||||||||| ||||||| || ||||| || |||| |||
Sbjct 378 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTACGGTACCGTCAGTAAGCT---ACA 322
Query 58 CGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117
||| | |||| ||||| || ||||| |||||||| || |||| ||||||||| ||
Sbjct 321 CGTAGCTTTTTTTCTTCCCGTACAAAAGCAGTTTACACACCATAGATGCTTCATCCTGCA 262
Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 261 CGCGGCATGGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 202
Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237
||||||| ||| |||||||||||| ||| ||||||||| || |||||||| ||||||| |
Sbjct 201 TAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACC 142
Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGT 297
|||| | | || ||| ||||||||| || |||| ||||||| |||||| | |||| |
Sbjct 141 CATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTT 82
Query 298 ACACCGATGAATCTTTAATGATGATA-CCATG-CAATCTCATCATACCATCAGGTATTAA 355
| ||| || ||||||| || || | | | ||| |||| || | || || |||||||||
Sbjct 81 ATACCAATAAATCTTT-ATAATAAAATCGATGCCAATTCTATTA-ACTATAAGGTATTAA 24
Query 356 TC 357
||
Sbjct 23 TC 22
>seq89015
Length=3127
Score = 190 bits (210), Expect = 4e-46
Identities = 174/216 (81%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||||||||||||| ||||||||||| ||||| ||| |||| | |
Sbjct 2914 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATCTGGTACCGGCAATGTCCCGCGCAC 2973
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCG-TAGAACCTTCATCCTTCACG 119
|| |||| ||||| ||||||| ||||||||| || ||| || || |||| ||||
Sbjct 2974 GGGCC-TTTTCTTCCCAGATAAAAGCAGTTTACAACCCAATAGG-CCGTCTTCCTGCACG 3031
Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179
| | ||||||| |||| |||||| |||||| |||||||||| ||||||||||||||||
Sbjct 3032 CGGCATGGCTGGGTCAGGCTCTCGCCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTA 3091
Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGA 215
||||| ||| |||| ||||||| ||| |||||||||
Sbjct 3092 GGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGA 3127
Score = 147 bits (162), Expect = 5e-33
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 179 AGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCC 238
|||||| ||| |||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 AGGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTACTG 60
Query 239 ATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTA 298
||||| | || ||||| ||||||| ||||| || | ||||| |||||| |||||| |
Sbjct 61 ATCGTCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTAATCAGACGCATGCCCATCCCA 120
Query 299 CACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAATC 357
|||||||||||||||| || | |||| || || | |||| ||||||||||
Sbjct 121 TACCGATGAATCTTTAACCATCCTCGGATGCCCTCCGATGGTGCCATGGGGTATTAATC 179
>seq5165
Length=98167
Score = 168 bits (186), Expect = 1e-39
Identities = 158/200 (79%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139
||||||| ||||||| ||| || ||||| || ||| || | ||||||| |||| ||
Sbjct 34486 TAAAAGAGCTTTACAACCCGAAGG-CCTTCTTCACTCATGCGGCATGGCTGGATCAGGCT 34428
Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199
||| |||||| |||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 34427 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCA 34368
Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259
|||||| ||||| || | |||||||||| | |||| ||| | | || ||| ||| |
Sbjct 34367 GTTCCAGTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGTCTTGGTAAGCCTT 34308
Query 260 TACCCCGCCTACTACCTAAT 279
|||| | || |||| |||||
Sbjct 34307 TACCTCACCAACTAACTAAT 34288
>seq48204
Length=5524
Score = 161 bits (178), Expect = 2e-37
Identities = 202/279 (72%), Gaps = 15/279 (5%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
||||||||||||| ||||||||| ||||| ||| |||||| || ||| |
Sbjct 5024 GGCTGCTGGCACGTAGTTAGCCGGTGCTTTTTCTGCAGGTACCGTCACTCTCGC------ 5077
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|| |||||| ||||||| |||||||| ||| || || || ||| ||||||
Sbjct 5078 --------TTCTTCCCTGCTAAAAGAGGTTTACAACCCGAAGG-CCGTCGTCCCTCACGC 5128
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | |||| |||| || || |||||| ||||||||| ||||||||||||||||||
Sbjct 5129 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 5188
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || |
Sbjct 5189 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 5248
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| | || |||| ||| ||||| | || || | || ||
Sbjct 5249 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 5287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1066873637632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |