Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1223 311 2e-82 seq89015 190 4e-46 seq5165 168 1e-39 seq48204 161 2e-37 >seq1223 Length=197574 Score = 311 bits (344), Expect = 2e-82 Identities = 290/362 (80%), Gaps = 10/362 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA---AGCTCCCACA 57 ||||||||||||||||||||||||| ||||||| || ||||| || |||| ||| Sbjct 378 GGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTACGGTACCGTCAGTAAGCT---ACA 322 Query 58 CGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCA 117 ||| | |||| ||||| || ||||| |||||||| || |||| ||||||||| || Sbjct 321 CGTAGCTTTTTTTCTTCCCGTACAAAAGCAGTTTACACACCATAGATGCTTCATCCTGCA 262 Query 118 CGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 177 ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 261 CGCGGCATGGCTGGTTCAGACTTCCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCG 202 Query 178 TAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATC 237 ||||||| ||| |||||||||||| ||| ||||||||| || |||||||| ||||||| | Sbjct 201 TAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACC 142 Query 238 CATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGT 297 |||| | | || ||| ||||||||| || |||| ||||||| |||||| | |||| | Sbjct 141 CATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTT 82 Query 298 ACACCGATGAATCTTTAATGATGATA-CCATG-CAATCTCATCATACCATCAGGTATTAA 355 | ||| || ||||||| || || | | | ||| |||| || | || || ||||||||| Sbjct 81 ATACCAATAAATCTTT-ATAATAAAATCGATGCCAATTCTATTA-ACTATAAGGTATTAA 24 Query 356 TC 357 || Sbjct 23 TC 22 >seq89015 Length=3127 Score = 190 bits (210), Expect = 4e-46 Identities = 174/216 (81%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| ||||||||||| ||||| ||| |||| | | Sbjct 2914 GGCTGCTGGCACGGAGTTAGCCGGTGCTTATTCATCTGGTACCGGCAATGTCCCGCGCAC 2973 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCG-TAGAACCTTCATCCTTCACG 119 || |||| ||||| ||||||| ||||||||| || ||| || || |||| |||| Sbjct 2974 GGGCC-TTTTCTTCCCAGATAAAAGCAGTTTACAACCCAATAGG-CCGTCTTCCTGCACG 3031 Query 120 CTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTA 179 | | ||||||| |||| |||||| |||||| |||||||||| |||||||||||||||| Sbjct 3032 CGGCATGGCTGGGTCAGGCTCTCGCCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTA 3091 Query 180 GGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGA 215 ||||| ||| |||| ||||||| ||| ||||||||| Sbjct 3092 GGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGA 3127 Score = 147 bits (162), Expect = 5e-33 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 179 AGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCC 238 |||||| ||| |||| ||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1 AGGAGTCTGGCCCGTATCTCAGTGCCAGTGTGGGGGACCTTCCTCTCAGAACCCCTACTG 60 Query 239 ATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTA 298 ||||| | || ||||| ||||||| ||||| || | ||||| |||||| |||||| | Sbjct 61 ATCGTCGCCTTGGTGGTCCGTTACACCGCCAACCAGCTAATCAGACGCATGCCCATCCCA 120 Query 299 CACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCATCAGGTATTAATC 357 |||||||||||||||| || | |||| || || | |||| |||||||||| Sbjct 121 TACCGATGAATCTTTAACCATCCTCGGATGCCCTCCGATGGTGCCATGGGGTATTAATC 179 >seq5165 Length=98167 Score = 168 bits (186), Expect = 1e-39 Identities = 158/200 (79%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 80 TAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACT 139 ||||||| ||||||| ||| || ||||| || ||| || | ||||||| |||| || Sbjct 34486 TAAAAGAGCTTTACAACCCGAAGG-CCTTCTTCACTCATGCGGCATGGCTGGATCAGGCT 34428 Query 140 CTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCA 199 ||| |||||| |||||||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 34427 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTATCTCA 34368 Query 200 GTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGT 259 |||||| ||||| || | |||||||||| | |||| ||| | | || ||| ||| | Sbjct 34367 GTTCCAGTGTGGCTGATCATCCTCTCAGATCAGCTATAGATCATTGTCTTGGTAAGCCTT 34308 Query 260 TACCCCGCCTACTACCTAAT 279 |||| | || |||| ||||| Sbjct 34307 TACCTCACCAACTAACTAAT 34288 >seq48204 Length=5524 Score = 161 bits (178), Expect = 2e-37 Identities = 202/279 (72%), Gaps = 15/279 (5%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||| ||| |||||| || ||| | Sbjct 5024 GGCTGCTGGCACGTAGTTAGCCGGTGCTTTTTCTGCAGGTACCGTCACTCTCGC------ 5077 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || |||||| ||||||| |||||||| ||| || || || ||| |||||| Sbjct 5078 --------TTCTTCCCTGCTAAAAGAGGTTTACAACCCGAAGG-CCGTCGTCCCTCACGC 5128 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || || |||||| ||||||||| |||||||||||||||||| Sbjct 5129 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 5188 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| | | |||||||| | ||| || | Sbjct 5189 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 5248 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || |||| ||| ||||| | || || | || || Sbjct 5249 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGAT 5287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066873637632