Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq6372 199 1e-46 seq26 163 7e-36 seq163424 120 8e-23 seq21230 95.1 3e-15 >seq6372 Length=86001 Score = 199 bits (220), Expect = 1e-46 Identities = 431/637 (68%), Gaps = 6/637 (1%) Strand=Plus/Minus Query 37703 AAAGAAGACCGAACGGGCGTCGGCACGCTGTCG-GTGTTCGGCCGCCAGCTCCGCTTCAA 37761 || |||||||| || ||| ||||| || | ||||||||| |||| | || ||| | Sbjct 39810 AAGGAAGACCGTACCGGCACGGGCAC-CTACAGCGTGTTCGGCTACCAGATGCGTTTCGA 39752 Query 37762 CTTACAAGATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTA 37821 | | ||||| || || |||| || || || || | || | ||||| ||||| | Sbjct 39751 CCTGGCCGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCA 39692 Query 37822 TGAACTGCTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGT 37881 || ||||| ||||| | | ||||| || ||| || || | |||| || ||||| Sbjct 39691 CGAGCTGCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGT 39632 Query 37882 GACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCA 37941 | || ||||| |||||||| ||||| |||||| | ||||||||| | |||||| || Sbjct 39631 CAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCA 39572 Query 37942 ATGGCGCTCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCG 38000 |||||| ||| || | |||| | |||||||||||||| ||| | | |||| Sbjct 39571 GTGGCGCAGCTGGCCGGCGCCCAACGGCGAGTCCATCGACCAGATCAGCA-AGCTGGTCG 39513 Query 38001 AAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAG 38060 | |||| | || ||| | || ||||| ||| | || || ||||| || Sbjct 39512 AGATGATCCGCAGCAACCCGGACTCGCGCCGTCTGATCGTCTCGGCCTGGAACCCGGCGC 39453 Query 38061 AATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC-CTTTCAGTTCTATGTCGCCAAC 38119 | || ||||| ||||||||| ||||| | ||| || |||||||| |||||| || Sbjct 39452 TGGTCGAGCAGATGGCGCTGCCGCCCTGTCA-TGCGCTGTTCCAGTTCTACGTCGCCGAC 39394 Query 38120 GGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTT 38179 ||| | |||| ||| | | |||||||| | || | || | || |||| || Sbjct 39393 GGCAAGCTGTCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTC 39334 Query 38180 AACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTC 38239 |||||||| |||||||| ||| |||||| ||||| || || |||| | || | Sbjct 39333 AACATCGCCAGCTACGCCCTGCTGACGCTGATGGTGGCGCAGGTCTGCGGCCTGCAGCCG 39274 Query 38240 GGTGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCG 38299 || || |||| | |||||||| ||| ||| ||||| || || | || || | Sbjct 39273 GGCGAGTTCATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAGACC 39214 Query 38300 AAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGA 38336 | ||||||||||| || |||||| |||||||||| Sbjct 39213 GACCTGCAGCTGACCCGTCAGCCGCTGCCGCTGCCGA 39177 >seq26 Length=549101 Score = 163 bits (180), Expect = 7e-36 Identities = 293/422 (69%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 37709 GACCGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAA 37768 ||||| || ||| |||||| ||||||||||||| |||| | |||||| || | Sbjct 240152 GACCGCACCGGCACCGGCACCTACTCGGTGTTCGGCCACCAGATGCGCTTCGACCTGGCC 240211 Query 37769 GATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTG 37828 || || || ||| | |||| || || || |||| | || ||||| | |||||| Sbjct 240212 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCACGAACTG 240271 Query 37829 CTTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATT 37888 || ||||| | | ||||| || ||| ||||||| || |||| | |||||| || Sbjct 240272 CTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGCATC 240331 Query 37889 TGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 ||||| |||||||| ||||| |||||||| ||||| ||| | |||||| || |||||| Sbjct 240332 TGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGGCGC 240391 Query 37949 TCGTGGAAGGGAGCAGACGGGAAAACCATCGACCAGATC-GCATGGGTTGTCGAAGA-GA 38006 || ||| | | | ||||| ||||||||||||| ||| || || | ||| || Sbjct 240392 TCCTGGCCGACACCGGACGGACGCCACATCGACCAGATCAGCAAGG--TGCTGGAGATGA 240449 Query 38007 TCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGG 38066 || || | ||| | || |||||||| | || ||||| ||||| ||| | | Sbjct 240450 TCCGGCGCACGCCGGACTCGCGCCGGCTCATCGTCAGCGCCTGGAACCCGGCACTGGTCG 240509 Query 38067 ACGAGATGAAGCTGCCGCCGTGTCATTACGCC---TTTCAGTTCTATGTCGCCAACGGCC 38123 |||| ||| ||||||||| || | ||||| || |||||||| || || || ||| Sbjct 240510 ACGACATGGCGCTGCCGCCCTGCC---ACGCCCTGTTCCAGTTCTACGTGGC--ACCGCC 240564 Query 38124 GG 38125 || Sbjct 240565 GG 240566 >seq163424 Length=1083 Score = 120 bits (132), Expect = 8e-23 Identities = 207/299 (69%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 |||||||||||| | ||| || ||| || | || |||||| | || || Sbjct 699 ATGAAACAATATCTCGACCTGATGCGCCACGTGCGCGAGAACGGCACCTTTAAGAGTGAT 758 Query 37712 CGAACGGGCGTCGGCAC--GCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAG 37769 || || ||| |||||| | || ||||| |||| ||| | ||||| | | | Sbjct 759 CGCACCGGCACCGGCACTTACAGT--GTGTTTGGCCATCAGATGCGCTTTGATCTGGCCG 816 Query 37770 ATGGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGC 37829 | || |||||||| ||||| || || || | ||| || |||||||| | || |||| Sbjct 817 AGGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACGAGCTGC 876 Query 37830 TTTGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTT 37889 | |||||||| | |||||||| ||| |||| ||| || |||| || ||||| | || | Sbjct 877 TGTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCTCCATCT 936 Query 37890 GGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGC 37948 |||| |||||||| ||||| || ||||| || || ||| | || ||| || |||||| Sbjct 937 GGGACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGGCTATCAGTGGCGC 995 >seq21230 Length=25512 Score = 95.1 bits (104), Expect = 3e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 37661 TATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGACCGAACGGGC 37720 || |||||| | | ||| ||||| |||| ||||||| ||| || | ||||| || || Sbjct 9199 TACTTAGACCTTTTACAACACATCCTAGACAACGGCGGCGACAAGGGCGACCGTACTGGT 9140 Query 37721 GTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGATGGATTTCCG 37780 || || | || || || || | || | || || | ||| | || || || Sbjct 9139 ACAGGAACACGTTCAGTATTTGGTCATCAAATGCGTTTTGATTTATCTAACGGTTTCCCA 9080 Query 37781 CTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTTTGGTTTTTA 37840 || | || || |||||| | ||| ||||||| ||| | |||||| ||||||||| | Sbjct 9079 CTACTCACCACAAAAAAAGTACATTTCCGCTCAATCGTCATTGAACTACTTTGGTTTCTT 9020 Query 37841 AAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGGGATGAGTGG 37900 ||||| ||||| || || | || || | || ||| ||||||||||||||||| ||| Sbjct 9019 AAAGGTGATACCAATGTTCAATACTTAAAAGACAATAAAGTGACGATTTGGGATGAATGG 8960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130360390881400