Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18050 190 2e-43 seq38288 185 7e-42 seq8748 109 4e-19 seq5663 104 2e-17 seq929 96.9 3e-15 seq27548 87.8 1e-12 >seq18050 Length=32055 Score = 190 bits (210), Expect = 2e-43 Identities = 566/856 (66%), Gaps = 23/856 (3%) Strand=Plus/Minus Query 61083 GGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGA 61142 |||| | |||| | ||||||||||||| | |||||||| |||| ||| || || | Sbjct 12418 GGATTTGTGGCTCTTGTACAAAAAGGCCGTTGCTTCCTTTTGGA---TGGCAGAAGTGAA 12362 Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 |||||||||||| | | | ||| | | ||| | || ||||| | ||| || Sbjct 12361 TTTGTCCAAAGATGTAAGATATTGGAAAAGATTAACCCCCGATGAACGGCGTTTTCTTTC 12302 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| ||||| || |||||||| || ||||| || ||||| |||||| ||||||| Sbjct 12301 TCATGTTTTGGCCTT-TTTGCCGCCAGTGAAGGTATTGTAAATGAAAATTTAGTGGAACG 12243 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 || || | || || ||||| ||||| ||||| || || | ||| ||||||||||| Sbjct 12242 CTTTGCTCGTGAAGTAAAAGTGATCGAGGCTCGTTGCTTTTATGACTTTCAGATTGCCAT 12183 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 || ||| | || || || |||||||| | | || || || | | | || | Sbjct 12182 TGAAAATATTCATTCAGAAATGTACAGCTTGTTGATTGAGACCCTCGTTCGAGATCATCA 12123 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGA-CGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | |||||| || ||||| || | | | || || || ||| || || | Sbjct 12122 AGAAAAAAATACATTGTTTAACGCCATTGAAACCCTTTCCTGC-GTTAAGAAAAAGGCAG 12064 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 | ||| | || |||||||| || | ||| | | ||| |||| || |||| | Sbjct 12063 AATGGTCATTAAATTGGAT-AC----AAAAC-CCGTCTTTTCCAAAACGGCTGGTGGCCT 12010 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 |||| | || || || | ||||| || || ||||| || || |||||||| |||| Sbjct 12009 TTGCCGCTGTGGAAGGAATCCTTTTCTCAGGTTCCTTTGCGGCCATTTTTTGGTTAAAGA 11950 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 |||| ||| | ||||| | | || || ||||| |||||||| || || || || Sbjct 11949 AACGGGGATTAATGCCTTGATTAACGTTTAGCAACGAGTTGATTAGTCGAGATGAAGGGC 11890 Query 61622 TGCATTGTGA-TTTTGCTGT--TTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG 61678 | || || || |||| |||| ||| ||||| | || | || | || Sbjct 11889 TACACTGCGATTTTTCCTGTCACTTG---TTCAATCATTACGTAAAAAACAAATCATCTA 11833 Query 61679 AGGAGCGTGTGGGTGAGATTGT-TCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 || | | | | ||| | |||| | || ||||| || || || |||||| | || Sbjct 11832 AGCATTAAATTGTGCAAATTATATCGT-ATGCCGTAACGATTGAGCAAGAATTTTTAACC 11774 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 || || || || || || ||||| |||||||||||| | | || ||| ||||||||| Sbjct 11773 GAGGCATTACCAGTATCCCTCATTGGCATGAATTGTACATTGATAAAGCAATATATTGAA 11714 Query 61798 TTTGTTGCCGACCGTCTGTTG-GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 ||||| || ||||| | ||| | ||| |||| || | || |||| | | |||| Sbjct 11713 TTTGTGGCAGACCGATTATTGTGGGAATTGGGGTGTG-ATAAAATTTATATTGTGGAAAA 11655 Query 61857 CCCATTTGATTTCATGGACATG-ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 ||| |||||||| | | ||| ||| |||| || || || |||| ||| | |||| Sbjct 11654 CCCTTTTGATTTTTTTGGAATGTATTAGTTTGGAAGGAAAAACCAATTGTTTTTAAAAAC 11595 Query 61916 GTGTAGGCGACTATCA 61931 |||| || || || || Sbjct 11594 GTGTCGGGGAATACCA 11579 >seq38288 Length=11396 Score = 185 bits (204), Expect = 7e-42 Identities = 377/557 (68%), Gaps = 10/557 (2%) Strand=Plus/Minus Query 61083 GGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGA 61142 |||| | |||| | ||||||||||||| | |||||||||||||||| || || || || Sbjct 8222 GGATTTGTGGCTCTTGTACAAAAAGGCTGTCGCTTCCTTCTGGACGGCAGAAGAAGTGGA 8163 Query 61143 TTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 |||||||||||| | || ||||| | ||| | || | || ||||| || Sbjct 8162 TTTGTCCAAAGATGGGGGAGATTGGGAAAGATTAACCCCCGATAAATGGCATTTTCTTTC 8103 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| |||| || |||||||| || ||||| || | ||| |||||| ||||||| Sbjct 8102 CCATGTTCTGGCCTTTTTTGCCGCCAGTGATGGTATTGTAATTGAAAATTTAGTGGAACG 8043 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||||| | || || ||||| | || | ||||| || || ||||| ||||||||||| Sbjct 8042 CTTCGCTCGCGAAGTCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTTTCAGATTGCCAT 7983 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 || ||| | || || || |||||||| | || || || | ||| | || | Sbjct 7982 TGAAAATATACATTCAGAAATGTACAGCTTGCTGATTGAGATCCTCATTTGAGATCATCA 7923 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGA-CGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| | |||||| || ||||| || | | | || || | ||| || || | Sbjct 7922 AGAAAAAAATAAATTGTTTAACGCCATTGAAACCCTTTCCTGC-TTTAAGAAAAAGGCAG 7864 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA-CATTTGGTGAACGATTGCTGGCA 61500 | ||||| || ||||||| ||||| | | | |||| |||| ||| |||| Sbjct 7863 AATGGGCATTAAATTGGA-------TACAAAATCCATCTTTTGCAAAACGGTTGGTGGCC 7811 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || || | |||||| || || ||| | || || |||||||| ||| Sbjct 7810 TTTGCCGCTGTGGAAGGAATCTTTTTCTCAGGTTCCTTTTCGGCTATTTTTTGGTTAAAG 7751 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 ||||| | | | ||||| || | || || ||||| ||||||| || || || || Sbjct 7750 AAACGGGAATTAATGCCTGGATTAACGTTTAGCAACAAGTTGATGAGTCGAGATGAAGGA 7691 Query 61621 ATGCATTGTGATTTTGC 61637 | || || |||||||| Sbjct 7690 CTACACTGGGATTTTGC 7674 >seq8748 Length=68017 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| ||||| | ||||| || |||||||| || |||| ||| || || | || || || Sbjct 32975 CTCATCAGGTGAAGTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCC 33034 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 |||||||| |||||| || | ||| || ||||||||||| | |||||| || || || Sbjct 33035 CAAATTCTTTTGATTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCC 33094 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||| |||||||| || ||||| || || ||||| Sbjct 33095 GGTTTCAACTTGCGATTCAATAATAGCAAACCAAA 33129 >seq5663 Length=92856 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 || |||||||| || || || ||||| || ||| ||| || |||||||| | || Sbjct 79244 TTATTCAATGCTATTGAAACTCTACCGTGTGTCAAGAAGAAGGCTGATTGGGCTCTTAAC 79303 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||||| | | | ||| | |||||||| ||| | | |||||||| | || || Sbjct 79304 TGGATCAGCTCAGCGAGTGCTTCCTTTGGTGAGCGAGTAGTTGCATTTGCTGCAGTTGAA 79363 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||| ||| ||| || ||||| | || || ||||||||||| | || | ||| Sbjct 79364 GGAATATTCTTCTCTGGCTCTTTTGCTTCTATTTTCTGGTTGAAGAAGAGAGGTTTGATG 79423 Query 61576 CCCGGTCTGACCTTCAGCAATGAGTTGATA 61605 || ||| |||| |||||||||||| | ||| Sbjct 79424 CCTGGTTTGACATTCAGCAATGAGCTAATA 79453 >seq929 Length=218852 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66326 TGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCT 66385 |||| ||| || |||||| | ||||||||||| ||||| ||||| | ||| || ||| Sbjct 79992 TGTTGTACTCGCTCCATAAACAAGTCAGGTATCCAAAGGGCATAGAACAAATCCCGAGCT 79933 Query 66386 CGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGC 66445 || ||||||| |||| |||||| |||||| | ||| ||||| || || |||||| Sbjct 79932 CGAAGCTCCTCCTTGCCTGTATTTTTCTTCAAGTCAATGAATTCAAAAATATCTGCATGC 79873 Query 66446 CATGGTTCCAGGTAGATGGCGAA 66468 ||||| || || || || | ||| Sbjct 79872 CATGGCTCTAGATAAATAGTGAA 79850 >seq27548 Length=17515 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 61744 TTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTT 61803 || || || || || || |||||||||||| | | ||| | | |||||||||||||| Sbjct 3 TTACCAGTGTCCCTGATTGGCATGAATTGTACATTGATGAAGAAATATATTGAATTTGTG 62 Query 61804 GCCGACCGTCTGTTGGTCGATTTGGGTATG-AAGCGGATCTATAATACGAAAAACCCATT 61862 || ||||| | ||| || ||||| ||| | || ||||| | ||||||| || Sbjct 63 GCAGACCGATTATTGTGGGAATTGGG-ATGTGATAAAATTTATAACGTGGAAAACCCTTT 121 Query 61863 TGATTTCATGGACATG-ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 |||||| ||||| ||| ||| |||| || || || |||||||| |||||||||| | Sbjct 122 TGATTTTATGGA-ATGTATTAGTTTGGAAGGAAAAACCAATTTTTTTAAGAAACGTGTCG 180 Query 61922 GCGA 61925 | || Sbjct 181 GAGA 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396694691695040