Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq6372 192 9e-44 seq26 156 6e-33 seq163424 149 1e-30 seq2304 93.3 6e-14 seq4 89.7 8e-13 >seq6372 Length=86001 Score = 192 bits (212), Expect = 9e-44 Identities = 188/240 (78%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 |||||||||||||| ||||| ||| | | | ||||| |||||||| ||||| ||| Sbjct 39804 GACCGTACCGGCACGGGCACCTACAGCGTGT-TCGGCTACCAGATGCGTTTCGACCTGGC 39746 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||| | |||||||| ||||| ||| ||||| || ||||| || || || Sbjct 39745 CGATGGTTTCCCCATCGTCACCACCAAGAAGTGCCACCTGCGCTCGATCATCCACGAGCT 39686 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||||||||||||| | || |||||||||||||||||||| || |||||||| ||| || Sbjct 39685 GCTGTGGTTCCTCCAGGGCGACACCAACATCAAGTACCTCAAGGACAACGGCGTCAGCAT 39626 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||||||||| |||| ||| ||||| || ||||| ||||| | |||||||| Sbjct 39625 CTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTCTACGGCTACCAGTGGCG 39566 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 196779 TGTCTTGTCAGCTGTATCAGCGTAGTGCGGATATGTTCCTCGGTGTACCGTTCAACATCG 196838 |||| || ||||| || ||||| ||||| || |||||||| || || |||||||||| Sbjct 39386 TGTCCTGCCAGCTCTACCAGCGCTCGGCGGACATCTTCCTCGGCGTGCCCTTCAACATCG 39327 Query 196839 CGTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGT---TAACATGGTACCGGGCG 196895 | ||||| |||||| | ||||||||| ||||| | || ||||||| Sbjct 39326 CCAGCTACGCCCTGCTGACGCTGATGGTGGCG---CAGGTCTGCGGCCTGCAGCCGGGCG 39270 Query 196896 AGTTCGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAG 196948 ||||| | ||||| ||||||||| |||| | ||| |||| ||||| || ||| Sbjct 39269 AGTTCATCTGGACCGGCGGTGACTGCCACCTGTACGCCAACCACATCGAGCAG 39217 >seq26 Length=549101 Score = 156 bits (172), Expect = 6e-33 Identities = 180/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 196124 GACCGTACCGGCACAGGCAC-TACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCA 196182 ||||| |||||||| ||||| ||| | | ||||| |||||||||||||| ||| Sbjct 240152 GACCGCACCGGCACCGGCACCTACTCGGTGT-TCGGCCACCAGATGCGCTTCGACCTGGC 240210 Query 196183 AGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACT 196242 || || |||||| || | ||||| ||||| || || ||| || ||||| || ||||| Sbjct 240211 CGAAGGCTTCCCGGTGCTGACCACCAAGAAGCTGCACCTGAAGTCGATCATCCACGAACT 240270 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 |||||||||||| | || |||||||||||| |||||||| || |||| || || Sbjct 240271 GCTGTGGTTCCTGCAGGGCGACACCAACATCCGCTACCTGAAGGAACACGGCGTGCGCAT 240330 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||||||||| |||| ||| |||| || ||||| ||||| | |||||||| Sbjct 240331 CTGGGACGAGTGGGCCGACGAGAACGGCGACCTCGGACCGGTCTACGGCTACCAGTGGCG 240390 >seq163424 Length=1083 Score = 149 bits (164), Expect = 1e-30 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 196123 TGACCGTACCGGCACAGGCACT-ACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGC 196181 ||| || |||||||| |||||| || | | | ||| ||||||||||| |||||| Sbjct 755 TGATCGCACCGGCACCGGCACTTACAGTGTGTTT-GGCCATCAGATGCGCTTTGATCTGG 813 Query 196182 AAGACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAAC 196241 || || || |||||||| ||||| ||||| ||||| |||||||| || || | Sbjct 814 CCGAGGGCTTTCCGCTGGTGACCACCAAGAAGTGTCATCTCAAGTCCATCATCCACGAGC 873 Query 196242 TGCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTA 196301 |||||||||| | | || || ||||||||| ||| ||||| || ||||| ||||| | Sbjct 874 TGCTGTGGTTTTTGCAGGGCGATACCAACATCCGGTATCTGAAGGAAAACGGCGTCTCCA 933 Query 196302 TCTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGC 196361 ||||| |||||||||| |||| || ||||||||||||| || || | ||||||| Sbjct 934 TCTGGGACGAGTGGGCAGACGAGAATGGCGACCTGGGGCCGGTCTATGGCTATCAGTGGC 993 Query 196362 G 196362 | Sbjct 994 G 994 >seq2304 Length=151846 Score = 93.3 bits (102), Expect = 6e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 13056 GTAGTTCAGCTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 13115 Query 3857 C 3857 | Sbjct 13116 C 13116 Score = 93.3 bits (102), Expect = 6e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 13210 GTAGTTCAGCTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 13269 Query 3857 C 3857 | Sbjct 13270 C 13270 Score = 93.3 bits (102), Expect = 6e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 |||||||||||||||||||||| ||||||||||||| | |||||||||||||| |||||| Sbjct 13329 GTAGTTCAGCTGGTTAGAATACATGCCTGTCACGCATGGGGTCGCGGGTTCGAGTCCCGT 13388 Query 3857 C 3857 | Sbjct 13389 C 13389 >seq4 Length=924746 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 3873 GGAGAATTGACCGAGAGGCCGAAAGTGCTCCCCTGCTAAGGGAGT-GGTGGCGAAAGCTG 3931 ||||| ||||||||||||||||| ||||||||||||||||||||| || | | ||||| Sbjct 61275 GGAGAGTTGACCGAGAGGCCGAAGGTGCTCCCCTGCTAAGGGAGTAGGGGTCAAAAGCCC 61216 Query 3932 CCCGTGCGTTCGAATCGCACATTCTCCGCCA 3962 | | | ||||||||| | | ||||||||| Sbjct 61215 CTCAAGGGTTCGAATCCCTTACTCTCCGCCA 61185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769804153549920