Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq5 190 3e-43 seq4656 96.9 5e-15 seq137299 93.3 6e-14 seq71469 84.2 3e-11 >seq5 Length=869209 Score = 190 bits (210), Expect = 3e-43 Identities = 541/825 (66%), Gaps = 46/825 (6%) Strand=Plus/Plus Query 162070 TAATATATTTGTAGCAATCCATTTGTAATGAAAGTAGCACTTATTACTGGGATCACAGGG 162129 |||||| ||||| | | | | | |||||||| |||||||||||| || | || || Sbjct 384701 TAATATTTTTGTTGGAGT---TATATAATGAAAAAAGCACTTATTACCGGTGTAACCGGC 384757 Query 162130 CAAGATGGATCTTACCTAGCTGAACTTCTCCTTCAGAAAGGATATACAGTTCACGGTATT 162189 || || || |||||| |||| || || | | | ||||| ||| || ||||||||| Sbjct 384758 CAGGACGGCTCTTACTTAGCCGAGTTTTTATTGGAAAAAGGTTATGAGGTACACGGTATT 384817 Query 162190 ATCCGTCGTGCTTCTATGATTAACACCCACAGAATTGACCATATCTTTGA----CCGCAT 162245 | |||||||| |||| ||||||| || | | || ||||| | ||| |||||| Sbjct 384818 AAGCGTCGTGCCTCTAGCTTTAACACGCAACGTGTCGATCATATTTATGAAGATCCGCAT 384877 Query 162246 ------------CACT-----CTCCATTATGGAGACCTTACCGATGCTTTGAGTATCGTA 162288 |||| ||||||||||| || | |||||| | | | | | || Sbjct 384878 GTCGATAACCAGCACTTTATTCTCCATTATGGTGATTTAACCGATACCTCTAATTTGGTG 384937 Query 162289 TCTATTATTAAAACAGTTCAACCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTT 162348 |||||| | || || || |||||||| |||||| |||| || || || || || Sbjct 384938 CGGATTATTCAGCAGGTGCAGCCGGATGAAATTTATAACTTAGGTGCACAAAGCCATGTA 384997 Query 162349 AAGGTTTCATTTGATCAGCCTGAATACACAGCACAGACCGACGCATTGGGCACTCTAAGG 162408 ||| ||||| || ||||| || || | || || | || || || || Sbjct 384998 GCGGTAAGTTTTGAAGCACCAGAATATACGGCTGATGTTGATGCTATTGGTACGCTGCGG 385057 Query 162409 GTGCTAGAAGCCGTCCGTCTTCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGA 162466 | |||||||| | ||| || | ||| | || | | || | | || || ||| Sbjct 385058 ATTCTAGAAGCGATTCGTATTTTAGGTTTAGAGAAGAAAACCC--GTTTTTATCAGGCGT 385115 Query 162467 GCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGT 162526 || |||||| ||||| |||| ||||||| || |||||||||||||| || | | Sbjct 385116 CAACTTCTGAGCTGTATGGTTTAGTGCAGGAGATTCCACAGAAAGAAACCACGCCGTTTT 385175 Query 162527 ATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACA 162586 | ||||| || ||||||| || |||||| | |||| | |||||| | | ||||||| Sbjct 385176 ACCCACGGTCACCTTATGCCGTAGCTAAAATGTATGCTTACTGGATTACCGTAAACTACC 385235 Query 162587 GGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCA 162646 | ||| |||| || |||||| || ||||||| |||| || || ||||| | ||| Sbjct 385236 GCGAAGCTTATGGTATGTATGCCTGTAACGGTATTTTATTTAACCATGAAAGTCCGCGCC 385295 Query 162647 GAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTG---TGG 162703 | || || || || || ||||| || || | | || | | |||| || || | Sbjct 385296 GTGGTGAAACCTTTGTAACACGTAAAAT--TACCCGCGGTTTAGCGAA-TATTGCCCAAG 385352 Query 162704 GACT----CCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTGGGGACAC 162759 | || ||| | || || | || || | ||||| |||||| ||||| || Sbjct 385353 GTCTTGAGCCATGTTTATTTA----TGGGCAATATGGATGCCTTACGTGATTGGGGGCAT 385408 Query 162760 GCCAAAGACTACGT--AGAGGCTATGTGGTTGATGCTTCAGCAAGAGAAGCCAGATGATT 162817 |||||||| || || | || |||| ||||| | |||||||| | ||||| || | Sbjct 385409 GCCAAAGATTATGTCCGCATGC--AGTGGATGATGTTACAGCAAGATCAACCAGAAGACT 385466 Query 162818 ATGTGATCGCAACTGGTGAGCAGTATTCTGTAAAGGACTTTGTTA 162862 ||| ||||| ||||| | |||||||| ||| || ||| ||| Sbjct 385467 TTGTTATCGCGACTGGCGTCCAGTATTCGGTACGTGAATTTATTA 385511 >seq4656 Length=104629 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGG-TAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAG 142851 ||||||||||||||| ||| |||||| ||||| ||||| ||||| ||||||||||||| Sbjct 93667 GGGGAATTAGCTCAGCTGGCTAGAGCACCTGCCTTGCACGCAGGGGGTCAACGGTTCGAA 93608 Query 142852 TCCGTTATTCTCCAC 142866 ||||||||||||||| Sbjct 93607 TCCGTTATTCTCCAC 93593 >seq137299 Length=1270 Score = 93.3 bits (102), Expect = 6e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 162112 ATTACTGGGATCACAGGGCAAGATGGATCTTACCTAGCTGAACTTCTCCTTCAGAAAGGA 162171 |||||||| ||||||||||| ||||| || || || || || | || || |||| || Sbjct 145 ATTACTGGTATCACAGGGCAGGATGGCTCCTATCTTGCCGAGTTCCTGCTGGAGAAGGGT 204 Query 162172 TATACAGTTCACGGTATTATCCGTCGTGCTTCTATGATTAACACCCACAGAATTGACCAT 162231 ||| || ||||| |||| |||||||||||| | |||||||| | | ||||||||| Sbjct 205 TATGAGGTGCACGGGATTAAGCGTCGTGCTTCTTCGTTTAACACCGAGCGTATTGACCAT 264 Query 162232 ATCT 162235 |||| Sbjct 265 ATCT 268 >seq71469 Length=5065 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142793 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAACGGTTCGAGT 142852 ||||| |||||| |||||||||||||||||||||||| |||||| |||| |||||| | Sbjct 4986 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 4927 Query 142853 CCGTTATTCTCCACCA 142868 | || ||||||||| Sbjct 4926 CTCCTAGTCTCCACCA 4911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689901376995360