Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq11269 113 2e-20 >seq11269 Length=54388 Score = 113 bits (124), Expect = 2e-20 Identities = 572/895 (64%), Gaps = 49/895 (5%) Strand=Plus/Plus Query 38457 CAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTGGCCTGCCAGTTTGTGATTCAGGCC 38516 ||||| || | ||||||||| | || || || || |||| || ||||| ||| Sbjct 12611 CAGTACGCTAGCGATGTCGTGAGTGGGGGTATCGTCGCGTGCCGGTATGTGAAGTTGGCA 12670 Query 38517 TGCCAGCGCCATCTTGATGACCTGATGGCGGAAAAAAGTAAGTCGTTTCGT--TACCGCT 38574 ||||||||| || |||||||| ||| | | | | | || || | ||| | Sbjct 12671 TGCCAGCGCTTCCTGAATGACCTGGAA-CGGCAGGACG-ATGACGATTGGACATACGTTT 12728 Query 38575 TCGACAAGGACCAGGCTGAACGGGCCGCGAAATTTATTCAGCTGTTGCCACACACCAAGG 38634 ||||| ||| | | || || || |||| || || || || || |||| |||||||| | Sbjct 12729 TCGACGAGGCCAAAGCAGATCGTGCCGTCAAGTTCATGCAACTCATGCCCCACACCAAAG 12788 Query 38635 GGGAGTGG---GCATTCAAACGGATGCCCATCACGCTGGAGCCGTGGCAGCTCTTTGTGA 38691 | ||||| || | || || || | | | ||||| |||||| | || | Sbjct 12789 GCAAGTGGAGTGCTTCGAAGTCGAAGCTGGT---GTTCGAGCCCTGGCAGGTATTCATCG 12845 Query 38692 TCTGCTGCGCGTTTGGCTGGGTCAATAAAGGCTCCCGGCTGCGCCGCTTCCGGGAGGTGT 38751 | | |||||||||||||| || | | || | |||| | ||||| |||| | Sbjct 12846 AGGCCAACATCTTTGGCTGGGTCAAGAAGGACACCGGCAAGCGCAGGTTCCGCGAGGCCT 12905 Query 38752 ATACCGAAATCCCCCGTAAGAACGGCAAATCGGCAATCTCTGCCGGTGTTGCCCTGTATT 38811 | || || ||| | |||||||| |||||||| | ||| | | | || | Sbjct 12906 ACGAAGAGATTCCCAGGAAGAACGGGAAATCGGCCCGCCTTGCTGCACGAGGTATTTACT 12965 Query 38812 GTTTTGCCTGTGATAACGAGTTTGGCGCGGAAGTGTATTCCGGTGCCACGACAGAGAAAC 38871 || ||| ||| ||||| || || || || |||||||| ||||| || ||||| | Sbjct 12966 TGTTCGCCGCAGATGGCGAGTCGGGAGCCGAGGTCTATTCCGGCGCCACCACCGAGAAGC 13025 Query 38872 AGGCGTGGGAAGTCTTTCGCCCGGCGCGACTGATGTGTAA-ACGC---ACACCCATGCTG 38927 |||||| || || ||||||||||| | ||||| | | | || | | || || Sbjct 13026 AGGCGTTCGAGGTATTTCGCCCGGCTTGGATGATGGCTCACAAGCTGGAGAACC----TG 13081 Query 38928 ACGGAAGCG-TTCGGGATTGAGGTTAACGCCTCAAACATGAACCGT----CC-------- 38974 || || || ||||| || ||| || | | | ||||| | || Sbjct 13082 -CGCAACCGGTTCGGCATCGAGCTTTCTGGAAATCAGAAGAACCCTGGCCCCATGTTCGT 13140 Query 38975 ---GGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTGATGGTTCATCACC 39031 |||||| || ||| || || ||||||| |||||||| |||||| | || Sbjct 13141 CATGGAGGACATGTCGAAGTTCGAGACGGTGATCGGCAACCCCGGGGATGGTGCGAGTCC 13200 Query 39032 CCACTGTGCTGTGGTGGATGAATATCACGAGCATGCCACAGATGCACTT--TACACCACG 39089 ||| ||| ||||||| || || ||||| || | |||||| || ||| | | || Sbjct 13201 CCATGCTGCCCTGGTGGACGAGTACCACGAACACGACACAGACGC-CTTGGTGGAT-ACC 13258 Query 39090 ATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCACCACCGCCGGG 39149 |||| || || ||||| |||||| |||||| || ||| | ||| || || | ||| Sbjct 13259 ATGCAGACAGGCATGGGGGCGCGAGAACAGCCATTGCTGTCGATCATTACGACGTCGGGG 13318 Query 39150 TACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGATGCTCAACGGC 39209 | || | | |||||| || ||||| ||||| ||||| || ||| || ||| | || Sbjct 13319 TCAAATCTCGGGGGGCCATGTTACGAGAAGCGCCGGGACGTGATCCGCATTCTCGAGGG- 13377 Query 39210 TCGGTGCCTAACGATGA-AC--TGTTCGGGATCATCTATACCGTTGATGAAGGTGACGAC 39266 | | | | |||||| || | |||||||||||||| || | || || | ||| Sbjct 13378 --GCAGACGATCGATGAGACGATCTTCGGGATCATCTACACGATCGACGAGGATGATTCG 13435 Query 39267 TGGACCGACCCG--CAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGT 39319 ||| |||||| ||| ||| || |||||||| ||| || |||||||| Sbjct 13436 TGGGATGACCCGGCCAG--CCTGATCAAGGCCAATCCGAATTACGGAGTGTCGGT 13488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246931589479456