Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24] 46,558 sequences; 1,140,786,310 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq412 120 2e-22 seq293 111 1e-19 >seq412 Length=567167 Score = 120 bits (132), Expect = 2e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 |||||| || | |||||| || ||| || ||| |||| ||||| ||||| || | || Sbjct 173632 GTTCAAGGCGACCGAGACAATGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTG 173573 Query 61458 GATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517 |||| |||| |||||| || || || || ||| | |||| || || | || ||||| Sbjct 173572 GATCGCCAGCCAAACGGCCACGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGGG 173513 Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577 | || ||| || ||||| | || || ||| | ||||| ||||| || ||||| Sbjct 173512 CATCTTCTTCTCGGGCAGCTTTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTCATGCC 173453 Query 61578 CGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||||| ||||||||||||||| | || || ||||| |||| Sbjct 173452 TGGTCTCACCTTCAGCAATGAGCTTATTTCGCGCGATGAGG 173412 Score = 109 bits (120), Expect = 4e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 61238 TCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTT 61297 ||||||| ||||| | | || || ||| ||||||||||| | | || ||||| | Sbjct 175077 TCGTCAACGAGAACCTGGTCGAGCGGTTCAGTCAGGAGGTGCAGATCACCGAAGCGCGCT 175018 Query 61298 GTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCA 61357 | ||||||||||| ||||| |||||||| |||||||||||||| |||||||| | |||| Sbjct 175017 GCTTCTACGGCTTTCAGATCGCCATGGAAAATGTCCACTCGGAAATGTACAGCTTGCTCA 174958 Query 61358 TCGATACGTACAT 61370 | || || ||||| Sbjct 174957 TTGACACCTACAT 174945 >seq293 Length=664131 Score = 111 bits (122), Expect = 1e-19 Identities = 168/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||||| ||||||||| || ||||| |||| ||||| | ||| ||||| Sbjct 205482 GTAGAGTTTCTCGAATTCTTCACCCCAAACATCGGAGAGACCGGGACAGTCGTGCGGACA 205541 Query 66304 CATCAGCGACCAA---TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360 ||| || ||| | || ||| | || || ||||| || || || || | ||| Sbjct 205542 CATGAGGCTCCACATTTGGTCAGCCT---CGACTCGTCGCATGAACAGGTCGGGCACCCA 205598 Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGT 66419 || |||||||| | |||||| ||||| |||||| | || ||| || || || || Sbjct 205599 CAGTGCGTAGAACAAATCGCGAGCTCGCACCTCCTCTTTTCCAGTG-TTCTTCTTCAGGT 205657 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474 | |||||||| | | ||| || ||||| || ||||||||||| ||||||| ||| Sbjct 205658 CCAGGAACTCGTAAACGTCCGCGTGCCACGGCTCCAGGTAGATCGCGAACGCGCC 205712 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126 ||||| | |||||||| || || || |||||||||| ||||||||||||| |||| Sbjct 211531 TTGTGTAAGTTGGAGACTGCAATGCGAGCGGCCAGGATTGCATAATCGGGATGACGAGTG 211590 Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186 | | | |||| |||||||| || ||||| |||| |||||| | || |||||||| || Sbjct 211591 GTTAGAGTGGCAGCAGTTTCGGCCGCCAAATTATCCAGTTCAACAGTTGTCACACCTGGG 211650 Query 67187 TACAGGCC 67194 |||| ||| Sbjct 211651 TACAAGCC 211658 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/152 (75%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACAT--TGTTGAAGACACGCAACATCGGTACGAGC 66544 ||| || |||||||| ||||| |||| | ||||||||||||||| ||| || ||||| Sbjct 206939 GCCTCCCTGGTCGACATAGCG--CGACGTGTTGTTGAAGACACGCAGCATGGGCACGAGG 206996 Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACA 66604 ||||| || |||| ||||||||| ||||| || || | |||| || ||| || Sbjct 206997 CCGTTGGACGTGCCGTTGGTGCCGGCGATGTACGAGCCACTGGCCCTGATGCAGTGCACG 207056 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 | ||| || || || || |||| ||||||||| Sbjct 207057 TGCAGGCCTATGCCTCCCGCCGACTTCGAGAT 207088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397342409729120