Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nilaparvata_20lugens_20[genbank_20GCA_5F000757685.1_202014-09-24]
46,558 sequences; 1,140,786,310 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq412 120 2e-22
seq293 111 1e-19
>seq412
Length=567167
Score = 120 bits (132), Expect = 2e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457
|||||| || | |||||| || ||| || ||| |||| ||||| ||||| || | ||
Sbjct 173632 GTTCAAGGCGACCGAGACAATGCCGTGTGTTAAGAGGAAGGCGGACTGGGCGTTGCAGTG 173573
Query 61458 GATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGG 61517
|||| |||| |||||| || || || || ||| | |||| || || | || |||||
Sbjct 173572 GATCGCCAGCCAAACGGCCACGTTCGGCGAGCGAGTTGTGGCGTTCGCCGCCGTTGAGGG 173513
Query 61518 TGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCC 61577
| || ||| || ||||| | || || ||| | ||||| ||||| || |||||
Sbjct 173512 CATCTTCTTCTCGGGCAGCTTTGCGTCCATATTCTGGCTTAAGAAGCGTGGTCTCATGCC 173453
Query 61578 CGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618
||||| ||||||||||||||| | || || ||||| ||||
Sbjct 173452 TGGTCTCACCTTCAGCAATGAGCTTATTTCGCGCGATGAGG 173412
Score = 109 bits (120), Expect = 4e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 61238 TCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTT 61297
||||||| ||||| | | || || ||| ||||||||||| | | || ||||| |
Sbjct 175077 TCGTCAACGAGAACCTGGTCGAGCGGTTCAGTCAGGAGGTGCAGATCACCGAAGCGCGCT 175018
Query 61298 GTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCA 61357
| ||||||||||| ||||| |||||||| |||||||||||||| |||||||| | ||||
Sbjct 175017 GCTTCTACGGCTTTCAGATCGCCATGGAAAATGTCCACTCGGAAATGTACAGCTTGCTCA 174958
Query 61358 TCGATACGTACAT 61370
| || || |||||
Sbjct 174957 TTGACACCTACAT 174945
>seq293
Length=664131
Score = 111 bits (122), Expect = 1e-19
Identities = 168/235 (71%), Gaps = 8/235 (3%)
Strand=Plus/Plus
Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303
|||||| | ||||| ||||||||| || ||||| |||| ||||| | ||| |||||
Sbjct 205482 GTAGAGTTTCTCGAATTCTTCACCCCAAACATCGGAGAGACCGGGACAGTCGTGCGGACA 205541
Query 66304 CATCAGCGACCAA---TCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCA 66360
||| || ||| | || ||| | || || ||||| || || || || | |||
Sbjct 205542 CATGAGGCTCCACATTTGGTCAGCCT---CGACTCGTCGCATGAACAGGTCGGGCACCCA 205598
Query 66361 GAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGT 66419
|| |||||||| | |||||| ||||| |||||| | || ||| || || || ||
Sbjct 205599 CAGTGCGTAGAACAAATCGCGAGCTCGCACCTCCTCTTTTCCAGTG-TTCTTCTTCAGGT 205657
Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCC 66474
| |||||||| | | ||| || ||||| || ||||||||||| ||||||| |||
Sbjct 205658 CCAGGAACTCGTAAACGTCCGCGTGCCACGGCTCCAGGTAGATCGCGAACGCGCC 205712
Score = 100 bits (110), Expect = 2e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126
||||| | |||||||| || || || |||||||||| ||||||||||||| ||||
Sbjct 211531 TTGTGTAAGTTGGAGACTGCAATGCGAGCGGCCAGGATTGCATAATCGGGATGACGAGTG 211590
Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186
| | | |||| |||||||| || ||||| |||| |||||| | || |||||||| ||
Sbjct 211591 GTTAGAGTGGCAGCAGTTTCGGCCGCCAAATTATCCAGTTCAACAGTTGTCACACCTGGG 211650
Query 67187 TACAGGCC 67194
|||| |||
Sbjct 211651 TACAAGCC 211658
Score = 98.7 bits (108), Expect = 8e-16
Identities = 114/152 (75%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACAT--TGTTGAAGACACGCAACATCGGTACGAGC 66544
||| || |||||||| ||||| |||| | ||||||||||||||| ||| || |||||
Sbjct 206939 GCCTCCCTGGTCGACATAGCG--CGACGTGTTGTTGAAGACACGCAGCATGGGCACGAGG 206996
Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACA 66604
||||| || |||| ||||||||| ||||| || || | |||| || ||| ||
Sbjct 206997 CCGTTGGACGTGCCGTTGGTGCCGGCGATGTACGAGCCACTGGCCCTGATGCAGTGCACG 207056
Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
| ||| || || || || |||| |||||||||
Sbjct 207057 TGCAGGCCTATGCCTCCCGCCGACTTCGAGAT 207088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397342409729120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |