Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1135 179 1e-42 >seq1135 Length=7154 Score = 179 bits (198), Expect = 1e-42 Identities = 105/109 (96%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1279 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGACGAATCTCTTCACTTTG 1220 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1219 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTCTCTG 1171 Score = 100 bits (110), Expect = 9e-19 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTANNTTA 437 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 7154 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTATTTGA 7095 Query 438 AG 439 || Sbjct 7094 AG 7093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635124355648