Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oithona_20nana_20[genbank_20GCA_5F900157175.1_202017-02-17] 4,626 sequences; 85,010,107 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq318 159 3e-34 seq230 95.1 1e-14 >seq318 Length=230163 Score = 159 bits (176), Expect = 3e-34 Identities = 302/439 (69%), Gaps = 8/439 (2%) Strand=Plus/Minus Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 || ||| ||||| | | ||||||| || || || ||||| || || ||| ||||| Sbjct 42792 TACCTCATCAGGCGAGCTATACTCTACGATCTCCGTGCAGAGGTTTGAGCACTTAATGGT 42733 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 |||||||||||| || || |||||| ||||| || |||||||| | ||| || ||||| Sbjct 42732 GCCCAAATTCTGCTGGTTGGACTTGCGGTTGCAAGCGTCCTTGTAGAGCATATAAGGAGT 42673 Query 66154 GCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACG 66213 || ||||||| || |||||||||||||| ||||| | | ||||| | | | | Sbjct 42672 ACCAGTCTCAATCTGCGACTCAATGATGGCAGCCCAAACCTCTTGAGCCTTGA-CTTGCT 42614 Query 66214 TACCG-CCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATA 66272 | | | | |||| ||||| | ||||| | || ||| ||| ||||| Sbjct 42613 TGCGGAATTTGCCTTCAGCCTCGTATTTCTCGTACAATCTCTCAAAGTCTTCGCCCCAGC 42554 Query 66273 CTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCA-ATCACCA--TCCTGTT 66329 |||| || | ||||||| || |||||||| || ||| || | | ||| | Sbjct 42553 AGTCGGCCAATCCCGGACACTCATGGGGACACATGAGGCTCCACATTCCGAATTCC---T 42497 Query 66330 CTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTT 66389 || || ||| |||| || || |||||||| | ||||||| || || || | | Sbjct 42496 TGACGCGTTTCATGAATAAGTCGGGAATCCAGAGCCCAAAGAAGAGGTCACGAGCCCTCT 42437 Query 66390 GCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 | ||||| | ||||| |||||||| | || | ||| || ||||| || || ||||| | Sbjct 42436 GTTCCTCCTTTCCGTGGTTTTTGCGGAGATCCAAGAAATCGAAGATATCCGCGTGCCACG 42377 Query 66450 GTTCCAGGTAGATGGCGAA 66468 |||||| |||||||||||| Sbjct 42376 GTTCCAAGTAGATGGCGAA 42358 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || ||| || || ||||||||||| | |||||||| || ||| Sbjct 44459 TCGACAGTGAACTGAATTGCAGAGGCTGCGGCCTTGGTCCTCAAGTAGTACATTCCCGTC 44400 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 |||||||| | |||| | ||||| ||||| || || | || ||| |||| || ||| Sbjct 44399 TTGAGGCCGACTTGCCAGCCGTAGAAGTGCATAGAGGACAGCTTGGCAAAATTGGGGTCG 44340 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGAT 65232 || | |||| ||||| ||||| ||||| ||||| Sbjct 44339 GCGATGTGCACGTTCAATGACTGGCTCTGGTCGAT 44305 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 65710 ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 |||||||| ||| | || || | |||||||||||||| || | ||||| | Sbjct 43684 ACAGCTGGCCTCCAAAGCTCCATAGTAAATGGTCTCGAAGATCTGCTTGTTAAGGAGCTG 43625 Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 ||||| ||| || | || | ||||| || || | |||||| | || || || Sbjct 43624 GGCCTCTGGGCTTTCAAATGGGTAGCGCATCAAGATGAAGGCGTCGGCTAAGCCCTGCAC 43565 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889 |||||| || || || || ||||||| |||||| | ||||| || || |||||||| Sbjct 43564 TCCAATGCCAATTGGGCGGTGACGCATATTGGAGTTACGGGCCTCGGGGACGGGGTAGTA 43505 Query 65890 ATTGATATCGATAAT 65904 ||||| |||||| || Sbjct 43504 ATTGACATCGATGAT 43490 >seq230 Length=975444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 61066 TTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGG 61125 || || ||| | ||||| ||||| ||| |||||||| || || || ||||||| Sbjct 389394 TTGCCTATCAAATATGACGATATCTGGAAAATGTACAAGAAAGCCATGGCCAGCTTCTGG 389453 Query 61126 ACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC-GTTTATCGAGCGG 61184 || | ||||| | || ||||||| ||| || || |||| ||| | || || Sbjct 389454 ACTGCCGAGGAAATTGACTTGTCCATGGACTTGGCAGATTGGGCCAAGTTGAAGGA-CGA 389512 Query 61185 TGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAA 61244 ||| | || ||||| || || || || || ||||||||||| || ||||| || ||||| Sbjct 389513 CGAAAAGCACTTCATCAAGCACGTCTTAGCCTTCTTTGCCGCCTCCGACGGCATTGTCAA 389572 Query 61245 TGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 |||||| | | ||| | ||| ||| || || ||| | | ||||| | || || || Sbjct 389573 TGAGAACCTTGTTGAAAGGTTCATGCAAGAAGTTCAAATTCCTGAGGCCAGATGCTTTTA 389632 Query 61305 CGGCTTCCA 61313 |||||||| Sbjct 389633 TGGCTTCCA 389641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545585364640