Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oncopeltus_20fasciatus_20[genbank_20GCA_5F000696205.1_202014-05-29] 17,222 sequences; 1,098,671,531 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq803 269 5e-70 seq348 208 1e-51 seq1919 179 6e-43 seq810 179 6e-43 seq2726 87.8 3e-15 seq232 82.4 1e-13 >seq803 Length=464868 Score = 269 bits (298), Expect = 5e-70 Identities = 202/236 (86%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | |||| ||| ||| |||||||||||||||||||| Sbjct 410249 TACTAAGCAGGATTACTATAGCAACGACCCCACATTAGTTGGGTAAAACTAACCTGTCTC 410308 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||| |||||||||||| |||||||||||| |||||| || Sbjct 410309 ACGACGGTCTAAACCCAGCTCATGTTCCCTATTAGCGGGTGAACAATCGGACGCTTGGCG 410368 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||| ||||||||| | |||||||| Sbjct 410369 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGTAGGATCAAACGACGACGTCGCTG 410428 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 | || ||||||| |||||||||| ||||| |||||||||||||||||| ||||||| Sbjct 410429 TAAATGCTTGGCCGCCACAAGCCGGTTATGCCTGTGGTAACTTTTCTGACACCTCT 410484 >seq348 Length=529237 Score = 208 bits (230), Expect = 1e-51 Identities = 198/251 (79%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||| |||||| ||||||| ||||||||| | | ||||| |||||||| ||||||||| Sbjct 316976 CATCTGTAGGGGAAAACTACCCTGTCTCACAAAGATCTAATACCAGCTCATGTTCCCTAT 316917 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| || |||||||| | | |||| |||||||||||| | ||||| |||||||||||| Sbjct 316916 TAGCGGTTGAACAATTCTATGCTTGGCGAATTCTGCTTTGCAATGATGGGAAGAGCCGAC 316857 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | ||||||||||| | | ||||| ||||||| ||| |||||| || |||||||| || Sbjct 316856 AAAGAAGGATCAAACAATGAAGTCGCCATGAACGTTTGCCTGCCAAAAACCAGTTATTCC 316797 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||| | | ||| ||| | | ||||||||||| | Sbjct 316796 TGTGGTAACTTTTCTGACACCTTTTGTAGAAAACTCTTCAACCTA--AAAGGATCGATGG 316739 Query 270 GCCACACTTTC 280 ||| |||||| Sbjct 316738 GCCCTACTTTC 316728 >seq1919 Length=193847 Score = 179 bits (198), Expect = 6e-43 Identities = 163/202 (81%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 81 ACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAG 140 ||||| |||||||| ||||||||||| ||| || |||||||||||||| || |||| Sbjct 73230 ACGTTTCCTATTAGCGGGTGAACAATTTGACGTTTGGCGAATTCTGCTTCGCAATAATAG 73171 Query 141 GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||| ||| ||||| ||||||| ||| | ||||||||||||||||||||| | |||||| Sbjct 73170 GAAAAGC-GACATTGAAGGATAAAACGACGACGTCGCTATGAACGCTTGGCCGGCACAAG 73112 Query 201 CCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAA 258 |||||||||||||||||| |||||||| || ||| || ||| |||| || | || Sbjct 73111 CCAGTTATCCCTGTGGTAGCTTTTCTGACATATCTTGCTGAAAACTTTTCAAGCCA--AA 73054 Query 259 AGGATCGATAGGCCACACTTTC 280 ||||||||| ||||| ||||| Sbjct 73053 AGGATCGATGGGCCATGCTTTC 73032 >seq810 Length=487973 Score = 179 bits (198), Expect = 6e-43 Identities = 116/126 (92%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 282172 CATCAGTAGGGTAAAACTAACCTGTCTC--GACGGTCTAAACCCAGCTCACGTTCCCTAT 282229 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||| ||||||||||| | |||||| |||||||||||||| |||||||||||||||||| Sbjct 282230 TAGCGGGTGAACAATTCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGAC 282289 Query 152 ATCGAA 157 ||| || Sbjct 282290 ATCAAA 282295 >seq2726 Length=118316 Score = 87.8 bits (96), Expect = 3e-15 Identities = 92/120 (77%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||| |||| |||||||||||| || | || ||||||||||||| || || ||| | Sbjct 41030 CATGAGTAAAATAAAACTAACCTACTGCAAGGCGTTCTAAACCCAGCTTACATTTCCTTT 41089 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTC-TGCTTCGGTATGATAGGAAGAGCCGA 150 ||| || ||||||||| || | | ||||||| ||||| | ||||| ||||||||||| Sbjct 41090 TAGCGGATGAACAATCAGACCCATGGCGAATTCTTGCTTTGCAATGATTGGAAGAGCCGA 41149 >seq232 Length=756317 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCT 79 ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 73920 CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCT 73967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854252855232