Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq533 205 1e-50 seq1688 179 6e-43 seq1873 147 3e-33 >seq533 Length=64277 Score = 205 bits (226), Expect = 1e-50 Identities = 210/260 (81%), Gaps = 12/260 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 43297 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 43354 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||||||| || ||||||||| ||||||| |||||| ||| ||||| || || Sbjct 43355 CTCGTTGAAGGGAAATAATTGCAATTCCCTATCCCGATCACGGATGGT-TTTCAGAGGTT 43413 Query 120 A-CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATC-AGTGTAGCGCGCGTG 177 ||| | ||| |||| | ||| | || | ||| | |||| ||||||||||||||| Sbjct 43414 TGCCCAGCCCTTTCGGGCCAGGAAAAGAACATGCTGA-TCCATCCAGTGTAGCGCGCGTG 43472 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTA 236 | |||| |||||||||||||||||||||||||||||||| ||||| || |||| | ||| Sbjct 43473 CAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTA 43529 Query 237 AAAGGC-CATCTCCCTCGAA 255 ||| | | | |||||| || Sbjct 43530 GAAGCCGCTTGTCCCTCTAA 43549 Score = 122 bits (134), Expect = 1e-25 Identities = 105/128 (82%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 91 ATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACT 149 ||||| | ||||| | | ||||| | |||||||| || ||||||| || |||| Sbjct 46574 ATCCCTAGCACGAAGGAGGTTCAACGGGTTACCCGGGCCGCTCGGCCAGGGA---AGACA 46630 Query 150 CGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 209 || ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46631 CGCTGATTCTTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 46690 Query 210 GTTATTGC 217 |||||||| Sbjct 46691 GTTATTGC 46698 >seq1688 Length=11477 Score = 179 bits (198), Expect = 6e-43 Identities = 174/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| |||||||| | ||||| |||||| | Sbjct 10785 GTACAAAGGGCAGGGACGTAATCAATTTGAGCT-GATGACTCAAGTTTACTGGGAATT-C 10728 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | ||| |||| ||||| | ||||| |||| | | | |||||| || || Sbjct 10727 CTCGTTCACGGGCAATAATTTCAATGCCCGATCCCAATCATGGTAAGTTTTCAATAGTTT 10668 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| | | | || ||| | |||||||||||||||||| Sbjct 10667 ACCCAGACCTTTCGGTCAAGG--AAACGCGCGCTGATCTTACCAGTGTAGCGCGCGTGCG 10610 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 218 |||| | ||||| |||||||||||||||||||||||||| Sbjct 10609 GCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCC 10571 >seq1873 Length=17552 Score = 147 bits (162), Expect = 3e-33 Identities = 166/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| |||||| || |||||| |||||| | Sbjct 10990 GTACAAAGGGCAGGGACGTAATCAGTACTAGCTA-ATGACTAGCACTTACTGGGAATT-C 10933 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| |||||||||| | || || ||||||||||| Sbjct 10932 CTCGTTCAAGGGGCACAATTGCAATCCCCTATCCCCATTAAGAAAAACATTCAAAGATTA 10873 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | | ||| || || | ||| || | ||| |||||||||||||||| Sbjct 10872 -CTAGTTTTGT-TAAAAACCAGAAACGCTCATTTTGTCTTTCAATGTAGCGCGCGTGCGG 10815 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| ||||||||||||||||||||||||||||||||| Sbjct 10814 CCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 10778 Score = 147 bits (162), Expect = 3e-33 Identities = 166/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||| |||||| || |||||| |||||| | Sbjct 14415 GTACAAAGGGCAGGGACGTAATCAGTACTAGCTA-ATGACTAGCACTTACTGGGAATT-C 14358 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| ||| ||||||||||| |||||||||| | || || ||||||||||| Sbjct 14357 CTCGTTCAAGGGGCACAATTGCAATCCCCTATCCCCATTAAGAAAAACATTCAAAGATTA 14298 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 | | ||| || || | ||| || | ||| |||||||||||||||| Sbjct 14297 -CTAGTTTTGT-TAAAAACCAGAAACGCTCATTTTGTCTTTCAATGTAGCGCGCGTGCGG 14240 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| ||||||||||||||||||||||||||||||||| Sbjct 14239 CCCCGAACATCTAAGGGCATCACAGACCTGTTATTGC 14203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751948444055