Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2749 178 5e-42 seq533 170 8e-40 seq1705 127 9e-27 seq1873 116 2e-23 >seq2749 Length=6404 Score = 178 bits (196), Expect = 5e-42 Identities = 217/296 (73%), Gaps = 20/296 (7%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||| |||||| | ||||||||| ||||||| ||||| Sbjct 5578 CCCGTCTTGAAACACGGACCAAGAAGTCTAGTAGTTATGCGAGTCATTGGGTGCAAAACC 5519 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGT----GG---GA------ACCCGTGAG------ 508 | ||||||||||||| || || | || || | ||||| Sbjct 5518 TATTGGCGTAATGAAAGTAAAGGGTCGCTTGCGGCCTGATATGTGATCCGTGGCTTGCTG 5459 Query 509 -GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 || ||| ||| | || || ||| ||| ||| | ||| |||||||| || | Sbjct 5458 CGGCGCAACATAGCCCCATGTCGATTGCTTGCAATGATGTGGAGGTAGAGCATAACTACT 5399 Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 5398 GGAACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGAGGAAACTCTGGTGG 5339 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | || |||||||||| ||||||||||||||| || | |||||||||||||| Sbjct 5338 AAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGCCAGACCCGGGTATAGGGGCGA 5283 Score = 109 bits (120), Expect = 2e-21 Identities = 114/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||| |||||| |||| | |||||||| || |||||| || | |||| || ||||||| Sbjct 6113 GAGTAGAGTTGCTTGGAAGTGCAGCTCGAATTGGGAGTTATACCACTTCCAAGGCTAAAT 6054 Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| | ||||||||||| ||||||| |||| |||| || |||| |||||| | Sbjct 6053 AC-GACCACAAGACCGATAGCGAACAAGTACCGTGAGGGAAAATTGCAAAGAACTTTGAA 5995 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 5994 GAGAGAGTTCAAGAGGACGTGAAACTG 5968 >seq533 Length=64277 Score = 170 bits (188), Expect = 8e-40 Identities = 218/306 (71%), Gaps = 27/306 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| ||||||||||||| |||||| | | |||||| |||||||| || Sbjct 41574 CGACCCGTCTTGAAACACGGACCAAGAAGTCTAGTAATTGCGCGAGTCATTGGGTGTAAA 41515 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGA-------GGTGGGAACCCGTGAG--------- 508 ||| | ||| ||||||||| || | | |||| || |||| Sbjct 41514 ACCTATTGGCGAAATGAAAGTAAAGGCATCCTTGCGGTGCTGACATGTGATCCGTTTGTC 41455 Query 509 -----------GGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 || ||| ||| | || || | ||| ||| |||| | | | |||| Sbjct 41454 TTCGGACTTGCGGCGCAACATGGCCCCATGCCGATTGCTTGCAATGGTGTGGCGGTAGAG 41395 Query 558 CATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAA 617 | || | || |||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 41394 CGTAATTACTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAA 41335 Query 618 ACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||||||| | || |||||||||| ||||||||||||||||| | |||||||||| Sbjct 41334 ACTCTGGTGGAAGTCCGAAGCGGTTCTGACGTGCAAATCGATCGTCTGACTTGGGTATAG 41275 Query 678 GGGCGA 683 |||||| Sbjct 41274 GGGCGA 41269 Score = 127 bits (140), Expect = 9e-27 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||| || |||||||| || |||| |||| | | || || ||||||| Sbjct 42107 GAGTCGAGTTGCTTGAGATTGCAGCTCAAAGTGGGTGGTATACCACATCCAAGGCTAAAT 42048 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 42047 AC-GGCCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 41989 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 41988 GAGAGAGTTCAAGAGGACGTGAAA 41965 >seq1705 Length=27829 Score = 127 bits (140), Expect = 9e-27 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| ||| |||| ||| |||||| ||| |||| Sbjct 8663 GGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGGGGAAACCCTGATGGA 8604 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 8603 GGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGTATAGGGGCGA 8549 >seq1873 Length=17552 Score = 116 bits (128), Expect = 2e-23 Identities = 204/288 (71%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||| || | |||||| |||||||| ||||| Sbjct 12466 CCCGTCTTGAAACACGGACCAAGGAGTTCAAATGGCACGCGAGTCGTTGGGTGTTAAACC 12525 Query 468 CGTGCGCGTAATGAAA-GTGAACGGAGGTGGGAACCCGTGAGGGTGC-ACCATCGACCGA 525 || ||| | ||||| | |||| | | | | ||| || | | || | ||| Sbjct 12526 CGAAGGCGAAGTGAAATGCAAACGTA--TTGTTATTTGTGGTTGTTCCATGATTAAGCGA 12583 Query 526 T------CCTGATGTCTTCGGATGGATTTG---AGTAAGAGCATAGCTGTTGG-GACCCG 575 | |||| || ||| | | | ||| | ||| ||| | | |||| | |||||| Sbjct 12584 TAAGCTACCTG-TGCTTTCTG--GCACTTGTAGACTAAAAGCGT-GATGTTTGAGACCCG 12639 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||| |||||||| | | ||||||||||||||||||||||||| | | Sbjct 12640 AAAGATGGTGACCTATGCCTAGTCAAGATGAAGCCAGAGGAAACTCTGGTGGATGTCTGA 12699 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| ||||||||||||| || || ||||||||||||||| Sbjct 12700 AGTTATTCTGACGTGCAAATCGATAATCTGATCTGGGTATAGGGGCGA 12747 Score = 116 bits (128), Expect = 2e-23 Identities = 204/288 (71%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||| || | |||||| |||||||| ||||| Sbjct 15887 CCCGTCTTGAAACACGGACCAAGGAGTTCAAATGGCACGCGAGTCGTTGGGTGTTAAACC 15946 Query 468 CGTGCGCGTAATGAAA-GTGAACGGAGGTGGGAACCCGTGAGGGTGC-ACCATCGACCGA 525 || ||| | ||||| | |||| | | | | ||| || | | || | ||| Sbjct 15947 CGAAGGCGAAGTGAAATGCAAACGTA--TTGTTATTTGTGGTTGTTCCATGATTAAGCGA 16004 Query 526 T------CCTGATGTCTTCGGATGGATTTG---AGTAAGAGCATAGCTGTTGG-GACCCG 575 | |||| || ||| | | | ||| | ||| ||| | | |||| | |||||| Sbjct 16005 TAAGCTACCTG-TGCTTTCTG--GCACTTGTAGACTAAAAGCGT-GATGTTTGAGACCCG 16060 Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||| |||||||| | | ||||||||||||||||||||||||| | | Sbjct 16061 AAAGATGGTGACCTATGCCTAGTCAAGATGAAGCCAGAGGAAACTCTGGTGGATGTCTGA 16120 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| ||||||||||||| || || ||||||||||||||| Sbjct 16121 AGTTATTCTGACGTGCAAATCGATAATCTGATCTGGGTATAGGGGCGA 16168 Score = 111 bits (122), Expect = 7e-22 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA 96 || ||||| |||||||||||| | || || || | || |||||||||| || || |||| Sbjct 11948 GAAGAGTCTAGTTGTTTGGGAGTACAACTTAAAGTTGGTGGTAAATTTCATCAAAGGCTA 12007 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||| | || ||| |||||| ||||||| ||| ||||| ||||||| ||| || Sbjct 12008 AATATACGA-AGGGACTAATAGCGAACAAGTACCATGAGGGAAAGTTGAAAAGAACTCTG 12066 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAA 182 |||||||||||||| |||||||| Sbjct 12067 ACGAGAGAGTTAAAAAGTACGTGAAA 12092 Score = 111 bits (122), Expect = 7e-22 Identities = 113/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTA 96 || ||||| |||||||||||| | || || || | || |||||||||| || || |||| Sbjct 15369 GAAGAGTCTAGTTGTTTGGGAGTACAACTTAAAGTTGGTGGTAAATTTCATCAAAGGCTA 15428 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||| | || ||| |||||| ||||||| ||| ||||| ||||||| ||| || Sbjct 15429 AATATACGA-AGGGACTAATAGCGAACAAGTACCATGAGGGAAAGTTGAAAAGAACTCTG 15487 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAA 182 |||||||||||||| |||||||| Sbjct 15488 ACGAGAGAGTTAAAAAGTACGTGAAA 15513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079848198350