Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onthophagus_20taurus_20[genbank_20GCA_5F000648695.1_202014-05-01] 7,077 sequences; 270,533,845 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1873 87.8 1e-15 seq533 71.6 8e-11 >seq1873 Length=17552 Score = 87.8 bits (96), Expect = 1e-15 Identities = 60/65 (92%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 14456 TCTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 14399 Query 108 GTAAT 112 ||||| Sbjct 14398 GTAAT 14394 Score = 82.4 bits (90), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 3/74 (4%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 11039 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 10983 Query 99 GGCAGGGACGTAAT 112 |||||||||||||| Sbjct 10982 GGCAGGGACGTAAT 10969 >seq533 Length=64277 Score = 71.6 bits (78), Expect = 8e-11 Identities = 46/49 (94%), Gaps = 1/49 (2%) Strand=Plus/Plus Query 76 AGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 43282 AGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGCT 43329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300780042860